Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O11
(481 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 33 0.022
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 31 0.090
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 30 0.16
SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces pombe... 29 0.48
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch... 28 0.64
SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|ch... 28 0.84
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos... 28 0.84
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p... 28 0.84
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom... 27 1.9
SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyce... 26 2.6
SPBC25H2.08c |mrs2||magnesium ion transporter Mrs2|Schizosacchar... 26 3.4
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 26 3.4
SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces pomb... 25 4.5
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 25 5.9
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 25 5.9
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos... 25 5.9
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 5.9
SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces p... 25 7.8
SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 25 7.8
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 25 7.8
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ... 25 7.8
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 33.1 bits (72), Expect = 0.022
Identities = 23/124 (18%), Positives = 51/124 (41%), Gaps = 2/124 (1%)
Frame = +1
Query: 19 LKCPSLSQRPSVSDETALFYAGCRVPNAPKS--SISEIFSPETTEGSPVKNGXXXXXXXX 192
L + S +PSVS ++ ++ + S S S + S ++ S +
Sbjct: 178 LSSSTSSSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLST 237
Query: 193 XXXXXXXXXHSRLFGQIANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSAS 372
S ++++S+S + + S+ + S + SP+ + S ++ S+S
Sbjct: 238 SSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSS 297
Query: 373 STPS 384
S+P+
Sbjct: 298 SSPT 301
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 31.1 bits (67), Expect = 0.090
Identities = 17/44 (38%), Positives = 25/44 (56%)
Frame = +1
Query: 247 NNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASST 378
NNS+ P + SN GDS +N G PS+ + +T+ + SST
Sbjct: 6 NNSSQPTVPSI--SNNSHGDSFVNEGPPSNFKNNSLTSSTHSST 47
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 30.3 bits (65), Expect = 0.16
Identities = 16/45 (35%), Positives = 24/45 (53%)
Frame = +1
Query: 253 SASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSR 387
S++P + +T S +L + SP HSP KP+ N S+ P R
Sbjct: 127 SSAPAVNETSSSGLL-QSKDKRSQSP-HSPKKPVKNSSSRDQPVR 169
>SPCC338.08 |ctp1|mug38|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 28.7 bits (61), Expect = 0.48
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 4/64 (6%)
Frame = +1
Query: 289 NILFGDSEMNGGSPSHSPSKPMTNGSA----SSTPSRGERDPTEY*GNPITGDGYKTMNG 456
N F + + P HSP+ P+ N SA S P ++ NPI + +++ +G
Sbjct: 98 NAPFSEKNQSVKIPPHSPTLPVQNASAFVKPISVPLGNVKEEKFLDTNPIGAESFESSDG 157
Query: 457 QINM 468
++++
Sbjct: 158 EMHL 161
>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 845
Score = 28.3 bits (60), Expect = 0.64
Identities = 19/53 (35%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = -1
Query: 313 SQSLQTGCYYGWCRLSSGKQSCSRSVQRVWNAYRAGVS-ECRELRVDEAYHSS 158
S S + + GW S K+S S+S+ V N Y GVS + E YH S
Sbjct: 240 SDSPSSDLHLGWDHTVS-KESMSQSIAEVLNPYNKGVSRSLNDATNMETYHWS 291
>SPCC4B3.03c |||DUF21 domain protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 679
Score = 27.9 bits (59), Expect = 0.84
Identities = 16/65 (24%), Positives = 29/65 (44%)
Frame = +1
Query: 283 RSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRGERDPTEY*GNPITGDGYKTMNGQI 462
+S++ G S PS P + + NG+ S+ E + + + DG K +G I
Sbjct: 512 KSSVADGPSSQAHNGPSTQPPEALPNGTDPSSSKTTENNGNQQSERTESADGKKDNSGSI 571
Query: 463 NMVTS 477
+ +S
Sbjct: 572 SSNSS 576
>SPBC947.01 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 27.9 bits (59), Expect = 0.84
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 328 PSHSPSKPMTNGSASSTPSRGERDPTEY 411
P H P+ P+T+ S SS+ + + P+ Y
Sbjct: 270 PLHVPAVPLTSASHSSSDGKSRKHPSPY 297
>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 673
Score = 27.9 bits (59), Expect = 0.84
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = -1
Query: 274 RLSSGKQSCSRSVQRVWNAYRAGVSECRELRVDEAYHSSQ 155
+L GK C R QR + A CR +D ++HS +
Sbjct: 294 KLEEGKSVCLRLYQRNNGSILAFPRSCRSFALDGSFHSDE 333
>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 581
Score = 26.6 bits (56), Expect = 1.9
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +1
Query: 232 FGQIANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGS 366
FG N S T +SN + E+N GS H PS+P N S
Sbjct: 521 FGSGNTNIGSLRQTKFKQSN--YTPPELNDGSRQHRPSRPSKNPS 563
>SPAC2C4.11c |rbp28||RNA-binding protein Rbp28|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 2.6
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Frame = +1
Query: 265 MITDTIRSNILFGDSEMNG-----GSPSHSPSKPMTNGSASSTP 381
++ DT R I F DS +NG G+P +P+K + P
Sbjct: 36 VMIDTTRGEIEFSDSAVNGTMDIEGAPKFAPAKTSAEKKRGAKP 79
>SPBC25H2.08c |mrs2||magnesium ion transporter
Mrs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 422
Score = 25.8 bits (54), Expect = 3.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -3
Query: 362 PLVIGFEGECEGLPPFISESPNRMLL 285
PL+ GF + PP ++ + NR+L+
Sbjct: 55 PLITGFPETSKNCPPSVAATKNRLLM 80
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = +3
Query: 396 GPNRILRQPDHRRRLQNDERPDQHG 470
GPNR+ P RLQN P Q G
Sbjct: 106 GPNRLANNPRVMPRLQNQNVPMQAG 130
>SPCC1259.08 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -1
Query: 340 ENVKDFHRSSQSLQTGCYYGWCRLSSGKQSCSRSVQRV 227
E+ F R Q++ Y G + + KQSCS RV
Sbjct: 190 ESFNSFSRKMQTISNSRYRGSPKPNIEKQSCSSESDRV 227
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Frame = +3
Query: 9 HVV-VKVPITEPASQCFGRNCFVLRWLQGAKRAEK*YQRDLQP 134
H+V VP+ EP C+ RWL + +QR + P
Sbjct: 1288 HIVNFTVPLLEPLPPCYFIKIVSDRWLHSITKVPLSFQRLIMP 1330
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 307 SEMNGGSPSHSPSKPMTNGSASSTPS 384
S+ NGG PS SPS T+ S S
Sbjct: 368 SKTNGGGPSDSPSSSSTSVRGSVNDS 393
>SPCC1322.12c |bub1||serine/threonine protein kinase
Bub1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1044
Score = 25.0 bits (52), Expect = 5.9
Identities = 13/46 (28%), Positives = 25/46 (54%)
Frame = +1
Query: 28 PSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGSPVKN 165
P++ + +++D +F R + KSS S I + + G+P+KN
Sbjct: 382 PTIHTKAALADILDIFNQPLRSESLEKSSKSPISAQSSYLGTPLKN 427
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 25.0 bits (52), Expect = 5.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 325 SPSHSPSKPMTNGSASSTPSRGERDPT 405
SPS+SPS P + S + PS PT
Sbjct: 1555 SPSYSPSSPGYSTSPAYMPSSPSYSPT 1581
>SPCC1322.05c |||leukotriene A-4 hydrolase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 612
Score = 24.6 bits (51), Expect = 7.8
Identities = 11/40 (27%), Positives = 24/40 (60%), Gaps = 2/40 (5%)
Frame = +3
Query: 153 PCEEWYASSTRSSRHSDTPARYAFQTL--WTDREQLCFPD 266
PC + S T S+++SD P++++ + + W+ ++ F D
Sbjct: 468 PCYKLAESWTNSAKNSDDPSKFSSKDIENWSAGQKSLFLD 507
>SPBC17D1.05 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 368
Score = 24.6 bits (51), Expect = 7.8
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 313 MNGG-SPSHSPSKPMTNGSASSTPSRG 390
+NG S SH PS + + SSTP+ G
Sbjct: 79 LNGSVSMSHVPSSGLLKSTLSSTPTAG 105
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 7.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 304 DSEMNGGSPSHSPSKPMTNGSASSTPSRGERDPTEY*GNPIT 429
+ E G SP+ SKP T SA+ S+ E + + PIT
Sbjct: 190 NDEQLGNSPASITSKPATT-SAAQPSSKVEENMAKATSQPIT 230
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +1
Query: 7 GTWLLKCPSLSQRPSVSDETALFYAGCRVPNAPKSSISEIFS 132
G+ L P + R ++ LF + PN P+SS S + S
Sbjct: 40 GSTRLTTPRTTARTPLASSPLLFESSSPGPNIPQSSRSHLLS 81
>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1213
Score = 24.6 bits (51), Expect = 7.8
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +1
Query: 232 FGQIANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRGE 393
+G + NN+ I I +N + + + + + S P NG ++ST G+
Sbjct: 381 WGSVINNAREHCINSGISANRILSPTLPSFSAKATSIINPQVNGRSNSTGKIGK 434
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.129 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,982,492
Number of Sequences: 5004
Number of extensions: 38837
Number of successful extensions: 119
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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