Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O11
(481 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AK128824-1|BAC87625.1| 706|Homo sapiens protein ( Homo sapiens ... 34 0.30
BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein. 32 1.2
AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens ... 30 3.7
Z25535-1|CAA80982.1| 1475|Homo sapiens nuclear pore complex prot... 29 6.4
X76556-1|CAA54056.1| 447|Homo sapiens CAB3b protein. 29 6.4
BC052965-1|AAH52965.1| 1475|Homo sapiens nucleoporin 153kDa prot... 29 6.4
AL157776-1|CAI16393.1| 1475|Homo sapiens nucleoporin 153kDa prot... 29 6.4
AL138824-2|CAI12246.1| 1475|Homo sapiens nucleoporin 153kDa prot... 29 6.4
AL138724-1|CAI40945.1| 1475|Homo sapiens nucleoporin 153kDa prot... 29 6.4
AB210024-1|BAE06106.1| 1455|Homo sapiens NUP153 variant protein ... 29 6.4
X76555-1|CAA54055.1| 484|Homo sapiens CAB3a protein. 29 8.5
U07139-1|AAA95958.1| 484|Homo sapiens voltage-gated calcium cha... 29 8.5
M91585-1|AAB02119.1| 1214|Homo sapiens Br140 protein. 29 8.5
D43704-1|BAA07803.1| 484|Homo sapiens voltage-dependant calcium... 29 8.5
BC053851-1|AAH53851.1| 1220|Homo sapiens bromodomain and PHD fin... 29 8.5
BC041811-1|AAH41811.1| 484|Homo sapiens calcium channel, voltag... 29 8.5
AF176815-1|AAF19605.1| 1214|Homo sapiens putative 8-hydroxyguani... 29 8.5
>AK128824-1|BAC87625.1| 706|Homo sapiens protein ( Homo sapiens
cDNA FLJ46160 fis, clone TESTI4002141. ).
Length = 706
Score = 33.9 bits (74), Expect = 0.30
Identities = 28/92 (30%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = -2
Query: 399 VPLTSAGRRRGAPVGHRLRRRM*RT---STVHLRVSKQDVTTDGVGYHRGSRV-VRDLSK 232
V + AGR G P GH +R + R + V VS+ V D G G RV V +
Sbjct: 575 VRVLCAGRLSGRPCGHPCQRSVCRATLRAAVRASVSECCVPGDSQGSRAGIRVRVLCAGR 634
Query: 231 ESGMRIARACRSVANYAWTRRTILHRAAFCCL 136
SG C+S A R + + CC+
Sbjct: 635 LSGRPCGHPCQSAVCRATLRAAVWASVSECCV 666
Score = 33.5 bits (73), Expect = 0.39
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = -2
Query: 399 VPLTSAGRRRGAPVGHRLRRRM*RT---STVHLRVSKQDVTTDGVGYHRGSRV-VRDLSK 232
V + AGRR G P GH + + R + V +S+ V D G G V V +
Sbjct: 471 VRVLCAGRRSGQPCGHPCQSAVCRATLRAAVRASMSECCVPGDAQGGRAGIHVRVLCAGR 530
Query: 231 ESGMRIARACRSVANYAWTRRTILHRAAFCCL 136
+SG C+S A R + + CC+
Sbjct: 531 QSGQPCGHPCQSAVCRAMLRAAVRASVSECCV 562
Score = 31.1 bits (67), Expect = 2.1
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 4/92 (4%)
Frame = -2
Query: 399 VPLTSAGRRRGAPVGHRLRRRM*RT---STVHLRVSKQDVTTDGVGYHRGSRV-VRDLSK 232
V + AGRR G P GH + + RT + + VS+ V D G G V V +
Sbjct: 211 VRVLCAGRRSGRPCGHLCQSAVCRTKLRAALRASVSECCVPGDAQGGCAGICVRVLCAGR 270
Query: 231 ESGMRIARACRSVANYAWTRRTILHRAAFCCL 136
SG C+S A R + + CC+
Sbjct: 271 RSGRPCGHPCQSAVCRAMLRAALRASMSECCV 302
>BC117319-1|AAI17320.1| 257|Homo sapiens TPRXL protein protein.
Length = 257
Score = 31.9 bits (69), Expect = 1.2
Identities = 27/130 (20%), Positives = 48/130 (36%), Gaps = 1/130 (0%)
Frame = +1
Query: 37 SQRPSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGSPVKNGXXXXXXXXXXXXXXXX 216
S PS S ++ + + SS S SP ++ S +
Sbjct: 71 SSSPSSSHSSSSPSSSSSTSSPSSSSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSS 130
Query: 217 XHSRLFGQIANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSAS-STPSRGE 393
S +++S+SP + + S+ S + S SPS ++ S+S S+PS
Sbjct: 131 SSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSS 190
Query: 394 RDPTEY*GNP 423
P+ +P
Sbjct: 191 SSPSSSSSSP 200
>AK092426-1|BAC03887.1| 258|Homo sapiens protein ( Homo sapiens
cDNA FLJ35107 fis, clone PLACE6006871, moderately
similar to SUPPRESSOR PROTEIN SRP40. ).
Length = 258
Score = 30.3 bits (65), Expect = 3.7
Identities = 26/118 (22%), Positives = 47/118 (39%)
Frame = +1
Query: 52 VSDETALFYAGCRVPNAPKSSISEIFSPETTEGSPVKNGXXXXXXXXXXXXXXXXXHSRL 231
++ AL G R ++ SS S + S + P + HS
Sbjct: 24 IAGPNALGSGGSR--SSSSSSRSILSSSILSSSIPSSSSSSSSPSSSHSSSSPSSSHSSS 81
Query: 232 FGQIANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRGERDPT 405
+++++SP + + S+ S + S S SPS ++ S+SS+PS P+
Sbjct: 82 SPSSSSSTSSPSSSSSSSSSSSPSSSNSSSSSSSSSPSS--SSSSSSSSPSSSSSSPS 137
Score = 29.5 bits (63), Expect = 6.4
Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 1/106 (0%)
Frame = +1
Query: 109 SSISEIFSPETTEGSPVKNGXXXXXXXXXXXXXXXXXHSRLFGQIANNSASPMITDTIRS 288
SS S SP ++ S + S +++S+SP + + S
Sbjct: 96 SSSSSSSSPSSSNSSSSSSSSSPSSSSSSSSSSPSSSSSSPSSSSSSSSSSPSSSSSSPS 155
Query: 289 NILFGDSEMNGGSPSHSPSKPMTNGSAS-STPSRGERDPTEY*GNP 423
+ S + S SPS ++ S+S S+PS P+ +P
Sbjct: 156 SSSSSSSSSSSSPSSSSPSSSGSSPSSSNSSPSSSSSSPSSSSSSP 201
>Z25535-1|CAA80982.1| 1475|Homo sapiens nuclear pore complex protein
hnup153 protein.
Length = 1475
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 LFGQIANNSA-SPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPS 384
+FGQ + SA T S FG S N ++SPS T G+ SSTP+
Sbjct: 1373 VFGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPA 1425
>X76556-1|CAA54056.1| 447|Homo sapiens CAB3b protein.
Length = 447
Score = 29.5 bits (63), Expect = 6.4
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQL 254
+RD L P D + + W SS RSSRH + A+Q L+ + QL
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPQCQL 443
>BC052965-1|AAH52965.1| 1475|Homo sapiens nucleoporin 153kDa protein.
Length = 1475
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 LFGQIANNSA-SPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPS 384
+FGQ + SA T S FG S N ++SPS T G+ SSTP+
Sbjct: 1373 VFGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPA 1425
>AL157776-1|CAI16393.1| 1475|Homo sapiens nucleoporin 153kDa protein.
Length = 1475
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 LFGQIANNSA-SPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPS 384
+FGQ + SA T S FG S N ++SPS T G+ SSTP+
Sbjct: 1373 VFGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPA 1425
>AL138824-2|CAI12246.1| 1475|Homo sapiens nucleoporin 153kDa protein.
Length = 1475
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 LFGQIANNSA-SPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPS 384
+FGQ + SA T S FG S N ++SPS T G+ SSTP+
Sbjct: 1373 VFGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPA 1425
>AL138724-1|CAI40945.1| 1475|Homo sapiens nucleoporin 153kDa protein.
Length = 1475
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 LFGQIANNSA-SPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPS 384
+FGQ + SA T S FG S N ++SPS T G+ SSTP+
Sbjct: 1373 VFGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPA 1425
>AB210024-1|BAE06106.1| 1455|Homo sapiens NUP153 variant protein
protein.
Length = 1455
Score = 29.5 bits (63), Expect = 6.4
Identities = 20/53 (37%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 229 LFGQIANNSA-SPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPS 384
+FGQ + SA T S FG S N ++SPS T G+ SSTP+
Sbjct: 1353 VFGQQPSQSAFGSGTTPNSSSAFQFGSSTTNFNFTNNSPSGVFTFGANSSTPA 1405
>X76555-1|CAA54055.1| 484|Homo sapiens CAB3a protein.
Length = 484
Score = 29.1 bits (62), Expect = 8.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>U07139-1|AAA95958.1| 484|Homo sapiens voltage-gated calcium
channel beta subunit protein.
Length = 484
Score = 29.1 bits (62), Expect = 8.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>M91585-1|AAB02119.1| 1214|Homo sapiens Br140 protein.
Length = 1214
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 247 NNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRG 390
N S++P R+++LF P P +P N + TPS G
Sbjct: 877 NMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHG 924
>D43704-1|BAA07803.1| 484|Homo sapiens voltage-dependant calcium
channel beta3 subunit protein.
Length = 484
Score = 29.1 bits (62), Expect = 8.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>BC053851-1|AAH53851.1| 1220|Homo sapiens bromodomain and PHD finger
containing, 1 protein.
Length = 1220
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 247 NNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRG 390
N S++P R+++LF P P +P N + TPS G
Sbjct: 883 NMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHG 930
>BC041811-1|AAH41811.1| 484|Homo sapiens calcium channel,
voltage-dependent, beta 3 subunit protein.
Length = 484
Score = 29.1 bits (62), Expect = 8.5
Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Frame = +3
Query: 117 QRD-LQPGDNRRQPCEE-WYASSTRSSRHSDTPARYAFQTLWTDREQ 251
+RD L P D + + W SS RSSRH + A+Q L+ Q
Sbjct: 396 ERDSLMPSDEASESSRQAWTGSSQRSSRHLEEDYADAYQDLYQPHRQ 442
>AF176815-1|AAF19605.1| 1214|Homo sapiens putative 8-hydroxyguanine
DNA glycosylase protein.
Length = 1214
Score = 29.1 bits (62), Expect = 8.5
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = +1
Query: 247 NNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRG 390
N S++P R+++LF P P +P N + TPS G
Sbjct: 877 NMSSTPAHEVGRRTSVLFSKKNPKTAGPPKRPGRPPKNRESQMTPSHG 924
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.312 0.129 0.383
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,041,929
Number of Sequences: 237096
Number of extensions: 1456758
Number of successful extensions: 3260
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 3115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3249
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4270724850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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