Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O11
         (481 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical pr...    35   0.027
U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protei...    30   0.76 
U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protei...    30   0.76 
U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore co...    29   1.7  
AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical ...    29   1.7  
U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor staphylo...    28   3.1  
AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.     28   3.1  
AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated...    28   3.1  
U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical pr...    27   5.3  
AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical ...    27   5.3  
AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical ...    27   5.3  
Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical pr...    27   7.0  
U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protei...    27   7.0  
AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical...    27   7.0  
U80843-1|AAB37966.1|  410|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical ...    27   9.3  

>Z98866-8|CAB11562.2|  425|Caenorhabditis elegans Hypothetical
           protein Y49E10.10 protein.
          Length = 425

 Score = 35.1 bits (77), Expect = 0.027
 Identities = 25/72 (34%), Positives = 33/72 (45%)
 Frame = +1

Query: 262 PMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRGERDPTEY*GNPITGDGY 441
           P   DT + N   GD +  GG P+  P+ P   G  S T  +G  DP +    P TGD Y
Sbjct: 89  PNAGDTTKPNSQSGDPKPRGGDPAGKPNPPA--GDPSKTKPQG-GDPAK--PKPQTGDPY 143

Query: 442 KTMNGQINMVTS 477
            T N  +   T+
Sbjct: 144 AT-NSTVKPATA 154


>U00066-9|AAA50743.3|  780|Caenorhabditis elegans Mediator protein
           15, isoform a protein.
          Length = 780

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 307 SEMNGGSPSHSPSKPMTNGSA--SSTPSRGERDP---TEY*GNPITG-DGYKTMNG 456
           S+  GG P+ +P+ P  NGS+  +  P+ G+  P       G P  G  GY  MNG
Sbjct: 182 SQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNG 237


>U00066-8|AAM54164.1|  777|Caenorhabditis elegans Mediator protein
           15, isoform b protein.
          Length = 777

 Score = 30.3 bits (65), Expect = 0.76
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +1

Query: 307 SEMNGGSPSHSPSKPMTNGSA--SSTPSRGERDP---TEY*GNPITG-DGYKTMNG 456
           S+  GG P+ +P+ P  NGS+  +  P+ G+  P       G P  G  GY  MNG
Sbjct: 179 SQAPGGGPTPAPNVPFPNGSSQMNGGPAMGQPPPQMGAPNMGGPPNGYGGYGMMNG 234


>U80438-5|AAB37636.1| 1217|Caenorhabditis elegans Nuclear pore complex
            protein protein7 protein.
          Length = 1217

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 15/52 (28%), Positives = 25/52 (48%)
 Frame = +1

Query: 223  SRLFGQIANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASST 378
            S +FG   N  + P ++ +  +N LFG +  +  +P    S    N  ASS+
Sbjct: 1089 SGVFGAFGNKPSQPGLSSSSSTNSLFGQAPADSSNPFGGTSNNGFNFGASSS 1140


>AL110480-2|CAB60326.1|  244|Caenorhabditis elegans Hypothetical
           protein Y24F12A.3 protein.
          Length = 244

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 24/84 (28%), Positives = 35/84 (41%), Gaps = 5/84 (5%)
 Frame = -2

Query: 405 GWVPLTSAGRRRGAPVGHRLRRRM*RTSTVHLRVSKQ-----DVTTDGVGYHRGSRVVRD 241
           GW+ +    RRR    G R RRRM R  +  + + +      +V  DG G+     V RD
Sbjct: 141 GWIEMADGRRRRRRRRGRRRRRRMDRDGSGWIGIDRDGSGWIEVDRDGSGW---IEVDRD 197

Query: 240 LSKESGMRIARACRSVANYAWTRR 169
            S   GM   +A  +      T +
Sbjct: 198 GSGGIGMNREKATTTTTTTTTTTK 221


>U40029-11|AAA81130.1|  914|Caenorhabditis elegans Tudor
           staphylococcal nuclease homologprotein 1 protein.
          Length = 914

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 244 ANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTPSRGERDPTE 408
           A +SA+P +   +  ++L GD+ +  G P + P    T   ++ T  R  R PT+
Sbjct: 15  AASSANPAVRRGLVKSVLSGDAVILQGQPHNGPPPEWTVYLSNVTAPRLGRRPTD 69


>AF535160-1|AAN33048.1|  468|Caenorhabditis elegans UNC-34 protein.
          Length = 468

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 295 LFGDSEMNGGSPSH-SPSKPMTNGSASSTPS 384
           LF   + +  S S  +PSKP TNG++S+ P+
Sbjct: 390 LFSQEDSSSSSSSTLTPSKPTTNGTSSAIPN 420


>AC025722-5|AAO12397.1|  454|Caenorhabditis elegans Uncoordinated
           protein 34, isoform a protein.
          Length = 454

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 295 LFGDSEMNGGSPSH-SPSKPMTNGSASSTPS 384
           LF   + +  S S  +PSKP TNG++S+ P+
Sbjct: 376 LFSQEDSSSSSSSTLTPSKPTTNGTSSAIPN 406


>U23515-4|AAU87816.1|  333|Caenorhabditis elegans Hypothetical
           protein R144.12 protein.
          Length = 333

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -3

Query: 401 GSLSPRLGVDEALPLVIGFEGECEGLPPFISESPNRM 291
           GSL  R G++ A+P+   F+   E L  F S++P  M
Sbjct: 107 GSLGVRTGLNLAVPMYSRFKNAQEALDYFKSQNPEGM 143


>AF098501-3|AAM69106.1|  275|Caenorhabditis elegans Hypothetical
           protein H28G03.2c protein.
          Length = 275

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 250 NSASPMITDTIRSNILFGDSEMNGGSP-SHSPSKPMTNGSASSTP 381
           N+ S M+T+ +++ +    + +N  SP S +P KP+ +  + + P
Sbjct: 219 NNLSSMLTNALKAQVSKAQNSLNNSSPTSTAPKKPVPSLMSINIP 263


>AF098501-2|AAM69105.1|  298|Caenorhabditis elegans Hypothetical
           protein H28G03.2b protein.
          Length = 298

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 250 NSASPMITDTIRSNILFGDSEMNGGSP-SHSPSKPMTNGSASSTP 381
           N+ S M+T+ +++ +    + +N  SP S +P KP+ +  + + P
Sbjct: 242 NNLSSMLTNALKAQVSKAQNSLNNSSPTSTAPKKPVPSLMSINIP 286


>AF098501-1|AAC67404.2|  548|Caenorhabditis elegans Hypothetical
           protein H28G03.2a protein.
          Length = 548

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/45 (26%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +1

Query: 250 NSASPMITDTIRSNILFGDSEMNGGSP-SHSPSKPMTNGSASSTP 381
           N+ S M+T+ +++ +    + +N  SP S +P KP+ +  + + P
Sbjct: 492 NNLSSMLTNALKAQVSKAQNSLNNSSPTSTAPKKPVPSLMSINIP 536


>Z71264-1|CAA95828.1|  998|Caenorhabditis elegans Hypothetical protein
            K07G5.1 protein.
          Length = 998

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +1

Query: 262  PMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASSTP 381
            P    T+ ++  F  S     SP+ S SK MT+ SAS +P
Sbjct: 896  PSAERTLSASSDFSLSPREASSPTTSNSKIMTSSSASDSP 935


>U97192-1|AAB52434.2|  986|Caenorhabditis elegans Hypothetical
           protein C01F4.2a protein.
          Length = 986

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = +1

Query: 298 FGDSEMNGGSPSHSPSKPMTNG---SASSTPSRGER 396
           F     +G  PSHS   P T+G   SA++TP  G +
Sbjct: 831 FPADSQDGPGPSHSHHDPSTSGTTMSATTTPGPGRK 866


>U41557-2|AAA83301.1|  309|Caenorhabditis elegans Hypothetical
           protein C50F7.5 protein.
          Length = 309

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = +1

Query: 304 DSEMNGGSPSHSPSKPMTNGSASSTPSRGERDPTE 408
           D     G PS  P  P  +   S  PS G  DP+E
Sbjct: 97  DEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSE 131


>U39745-4|AAA80446.1|  325|Caenorhabditis elegans Collagen protein
           173 protein.
          Length = 325

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 12/34 (35%), Positives = 16/34 (47%)
 Frame = +1

Query: 340 PSKPMTNGSASSTPSRGERDPTEY*GNPITGDGY 441
           P KP   G + +  +RG   P  +  NP T  GY
Sbjct: 292 PGKPGEPGKSGAAGARGPAGPCNHCPNPRTAPGY 325


>AL033514-14|CAA22101.2| 1420|Caenorhabditis elegans Hypothetical
           protein Y75B8A.13 protein.
          Length = 1420

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 32/136 (23%), Positives = 45/136 (33%), Gaps = 1/136 (0%)
 Frame = +1

Query: 19  LKCPSLSQR-PSVSDETALFYAGCRVPNAPKSSISEIFSPETTEGSPVKNGXXXXXXXXX 195
           L+ P  S + P   D   +       P AP+ S  E+  PE  E    KN          
Sbjct: 519 LEDPEASPKSPETVDAAPIEEGSDAAPEAPEPSPLELLDPELREDEDPKN--ASEGNFQS 576

Query: 196 XXXXXXXXHSRLFGQIANNSASPMITDTIRSNILFGDSEMNGGSPSHSPSKPMTNGSASS 375
                     R  GQ     AS    D++ S      +E    S      +  ++ S  S
Sbjct: 577 DDSQIYSEERRQVGQEYQEEASEDKDDSMDS------AEAGERSDDPQDLRESSSSSDES 630

Query: 376 TPSRGERDPTEY*GNP 423
             S G   P+E  G+P
Sbjct: 631 DESEGNSSPSEAPGSP 646


>U80843-1|AAB37966.1|  410|Caenorhabditis elegans Hypothetical
           protein C32B5.10 protein.
          Length = 410

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 14/33 (42%), Positives = 19/33 (57%)
 Frame = +3

Query: 351 DDQRERLVDAQPR*EGPNRILRQPDHRRRLQND 449
           D+QR+ +VD +   EG  RILR     R L +D
Sbjct: 90  DEQRDVVVDNRSLEEGEKRILRMEYELRMLTDD 122


>AF024496-2|AAB70340.1| 1459|Caenorhabditis elegans Hypothetical
            protein ZC178.2 protein.
          Length = 1459

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
 Frame = +1

Query: 244  ANNSASPMITDTIRSNILFGDSEMNGGSPSHS--PSKPMTNGSASSTPSRGERDPTEY*G 417
            A NSAS        +    G S M   S S +  PS  +TN ++S TP   E   ++   
Sbjct: 1338 ATNSASSETPCNSETQTSDGTSTMTVSSDSTTAGPSSTVTNSASSETPCNSETQTSDG-T 1396

Query: 418  NPITGDGYKTMNGQINMVTS 477
            + +T     T  GQ +  T+
Sbjct: 1397 STMTVSSDSTTAGQSSTATN 1416


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.312    0.129    0.383 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,258,098
Number of Sequences: 27780
Number of extensions: 232446
Number of successful extensions: 787
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 783
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)