Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O09
(585 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 29 0.50
SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|c... 28 0.87
SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyc... 26 3.5
SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2 |... 26 4.7
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 25 6.2
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 25 6.2
SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce... 25 8.1
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S... 25 8.1
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr 1|||Ma... 25 8.1
SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|ch... 25 8.1
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 8.1
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 8.1
>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 398
Score = 29.1 bits (62), Expect = 0.50
Identities = 21/58 (36%), Positives = 35/58 (60%)
Frame = +3
Query: 96 APSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEK 269
AP K L K+ N+L+S L+ SCL+D T+ K ++ +EKTQ+ +FD +++
Sbjct: 13 APGNKCLAKL-NELESILKDAKKSCLKDPTTSMKELV-----ACSEKTQQ-VFDDLKR 63
>SPAC29A4.06c |||human CCDC55 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 355
Score = 28.3 bits (60), Expect = 0.87
Identities = 24/71 (33%), Positives = 35/71 (49%)
Frame = +3
Query: 183 DTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQN 362
D EK V S + E+ QK++ D E+ D S+ T T K+ + EK HQ
Sbjct: 131 DATEKFVTSSYKK-HREEVQKAIEDRKEE-DEKSITDTTTGMKDFYASM-LDRQEKIHQA 187
Query: 363 LLEGVEHFDKT 395
+EGV++ KT
Sbjct: 188 AVEGVQNSKKT 198
>SPAC23D3.14c |aah2||alpha-amylase homolog Aah2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 581
Score = 26.2 bits (55), Expect = 3.5
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +3
Query: 126 ANDLKSQLE---GFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKH 293
+ND++S G L DVDT ++VL E Q+ DGI +FDA +KH
Sbjct: 182 SNDIESVQNCWLGDENLLLADVDTENEVVLSVLEKWIKNVVQEYDIDGI-RFDA--IKH 237
>SPBC16D10.10 |||tRNA specific adenosine deaminase subunit Tad2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 367
Score = 25.8 bits (54), Expect = 4.7
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Frame = +3
Query: 111 DLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEK--TQKSLFDGIEKFDATS 284
DL KV ND + + S + N I+LP E++ T + L D + + + TS
Sbjct: 144 DLTKVLNDFVTLSKPAYDSSIHPTRENADIILPQKENIDTALLFVSQHLQDILAEMNKTS 203
Query: 285 LKHT 296
+T
Sbjct: 204 SSNT 207
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 6.2
Identities = 13/62 (20%), Positives = 27/62 (43%)
Frame = +3
Query: 216 EDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKT 395
EDV E+ + + E D ++ E + +N P+ + + G+E +D+T
Sbjct: 248 EDVDEEEEEDDDENNDEGDDEDENENDELRSENGSPNPSAAVINEQENMNMSGIEEYDET 307
Query: 396 QM 401
+
Sbjct: 308 NL 309
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 25.4 bits (53), Expect = 6.2
Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = -3
Query: 355 CAFSAATTSLSGRGFFSWVSVCFKLVASNFSI-PSNRDF 242
C S +TS G W S CFK V N + PS+ DF
Sbjct: 27 CWESVPSTSQVWFGGKCWHSDCFKCVNCNKKLDPSSEDF 65
>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 474 KFLNGIESFDPTKLKHTETCEKN 542
K L G +S DP L+ + CE+N
Sbjct: 311 KELEGSDSIDPILLEKIDVCEEN 333
>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 8.1
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +3
Query: 120 KVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTE 299
K N+ +EG T R + + + L S ED+ + T+ S+ + + ++HT
Sbjct: 111 KRPNETDISVEGVVT---RVHERHISVALKSEEDIPSSVTRLSVVKLVNRVTYERMRHTM 167
Query: 300 TQEKNPLPD 326
+ K +P+
Sbjct: 168 LEFKRSIPE 176
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 241 WVFSVATSSADGRTIFSFVSTSRKQL 164
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 241 WVFSVATSSADGRTIFSFVSTSRKQL 164
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 241 WVFSVATSSADGRTIFSFVSTSRKQL 164
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
>SPAC1952.11c |ure2||urease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 8.1
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = -1
Query: 372 LPVSSDVPFPLRQHLCQAEGSSPGFLYV 289
LP S FPL + A +SPGF+ V
Sbjct: 114 LPTPSQELFPLEEEKLYAPENSPGFVEV 141
>SPAC25B8.11 |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 654
Score = 25.0 bits (52), Expect = 8.1
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +3
Query: 477 FLNGIESFDPTKLKHTETCEKNPL 548
F NG+ SFD +K+ T K+P+
Sbjct: 174 FENGVCSFDNMTVKYVSTSSKSPV 197
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +3
Query: 225 ATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPD 326
+T QKSL D E DA LK + + LPD
Sbjct: 83 STLDLQKSLIDADENVDANVLKDSASIRHVSLPD 116
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 25.0 bits (52), Expect = 8.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 241 WVFSVATSSADGRTIFSFVSTSRKQL 164
W+FSVA S IFS + T R ++
Sbjct: 122 WIFSVAMSFFTAWVIFSTILTKRAKI 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,258,642
Number of Sequences: 5004
Number of extensions: 45993
Number of successful extensions: 151
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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