Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O09
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosi...    80   1e-15
Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z48009-2|CAA88077.1|  230|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical p...    27   9.8  
Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>AF026213-7|AAB71308.2|  151|Caenorhabditis elegans Tetra thymosin
           (four thymosin repeatprotein) protein 1 protein.
          Length = 151

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 53/144 (36%), Positives = 70/144 (48%), Gaps = 1/144 (0%)
 Frame = +3

Query: 102 SLKDLPKVANDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDA 278
           ++ +LPK+  +L   + EG     L+ V+T EK VLP+ EDVA EK        IE FD+
Sbjct: 3   AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59

Query: 279 TSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXX 458
           T L  T  +EK  LP  D +  EK H  L + + +F    +K T T EKN L        
Sbjct: 60  TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVL----PSPT 115

Query: 459 XXXXNKFLNGIESFDPTKLKHTET 530
                K L    SFD + L H ET
Sbjct: 116 DVAREKTLQMAASFDKSALHHVET 139



 Score = 70.1 bits (164), Expect = 1e-12
 Identities = 38/103 (36%), Positives = 52/103 (50%)
 Frame = +3

Query: 273 DATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXX 452
           +   LK  ET EKN LP K+ VA EK H   +  +EHFD T++  T  +EK  L      
Sbjct: 20  EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTKLHSTPVKEKIVLPSADDI 79

Query: 453 XXXXXXNKFLNGIESFDPTKLKHTETCEKNPLPTKDVIEQEKS 581
                  +  + I +F    LK TET EKN LP+   + +EK+
Sbjct: 80  KQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKT 122



 Score = 39.1 bits (87), Expect = 0.002
 Identities = 28/82 (34%), Positives = 37/82 (45%)
 Frame = +3

Query: 333 VVAAEKAHQNLLEGVEHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTK 512
           V    K +Q L   V   +  ++K   T EKN L             + ++ IE FD TK
Sbjct: 4   VTELPKMNQELAGAVR--EGLELKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDSTK 61

Query: 513 LKHTETCEKNPLPTKDVIEQEK 578
           L  T   EK  LP+ D I+QEK
Sbjct: 62  LHSTPVKEKIVLPSADDIKQEK 83


>Z81082-3|CAB03095.2|  603|Caenorhabditis elegans Hypothetical
           protein F42G4.3a protein.
          Length = 603

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 14/55 (25%), Positives = 25/55 (45%)
 Frame = +3

Query: 378 EHFDKTQMKHTTTEEKNSLXXXXXXXXXXXXNKFLNGIESFDPTKLKHTETCEKN 542
           ++F+ T    TTT   NSL               L   E +DP+K++ +++  +N
Sbjct: 209 DYFNNTATTATTTTSSNSLNENNNSNKYGNKETVLQWSEPYDPSKIRRSQSPIRN 263


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 16/66 (24%), Positives = 28/66 (42%)
 Frame = +3

Query: 210 SAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFD 389
           S       K  + L   +E   + +  H + ++KN   D ++   E   Q  LEG   F+
Sbjct: 367 SCNSTIEHKEAEELISHLELESSQNSIHNDNRKKNEDYDMEISEIETITQRQLEGYGTFN 426

Query: 390 KTQMKH 407
             +MK+
Sbjct: 427 SPEMKN 432


>Z49908-11|CAA90104.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +1

Query: 157 STRAACETSTQMRRSSYRRXXXXXXXXXXXXYSTVLRNSMPPV*NIQKPRRRTLCLTKM- 333
           ST +    ST  R SS               YSTV   ++     +Q P+R  +C T + 
Sbjct: 56  STTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCSTPIK 115

Query: 334 --LSQRKRHIR 360
              S  K H++
Sbjct: 116 NGTSDAKSHLK 126


>Z49070-5|CAA88872.2|  355|Caenorhabditis elegans Hypothetical
           protein T09F3.1 protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +1

Query: 157 STRAACETSTQMRRSSYRRXXXXXXXXXXXXYSTVLRNSMPPV*NIQKPRRRTLCLTKM- 333
           ST +    ST  R SS               YSTV   ++     +Q P+R  +C T + 
Sbjct: 56  STTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCSTPIK 115

Query: 334 --LSQRKRHIR 360
              S  K H++
Sbjct: 116 NGTSDAKSHLK 126


>Z48009-2|CAA88077.1|  230|Caenorhabditis elegans Hypothetical
           protein AH6.3 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 216 EDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAH-QNLLEGVEHFDK 392
           E   T++ +KS  + + K  A SLK  E  +KNP     +V  E      + E  E   K
Sbjct: 157 EKEKTQEKEKSKDETVPKQHAPSLKRQEG-DKNPEITNPIVTPETDEFPTIDEDAEKTKK 215

Query: 393 TQMKHTTTE 419
           T+ K   TE
Sbjct: 216 TEKKDVKTE 224


>Z99281-12|CAB16521.1|  649|Caenorhabditis elegans Hypothetical
           protein Y57G11C.20 protein.
          Length = 649

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 26/116 (22%), Positives = 49/116 (42%), Gaps = 6/116 (5%)
 Frame = +3

Query: 96  APSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFD 275
           A    DLP V N L    +         +  NE++  P +++  +E+    + + I + +
Sbjct: 77  AAQYDDLPHVVNSLNGVQKPRMKRGAPLILENEQVKRPKSDEPLSERDV--IINKIRELE 134

Query: 276 ATSLKHTET------QEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMKHTTTEEK 425
           A + K  E       +EKN   +K +   +KA +   +     D+ + KH  T +K
Sbjct: 135 AKAKKDEEERIAREKEEKNKQREKHLATHKKAEEFAKKVQTDKDEQREKHLDTHKK 190


>Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical
           protein F18E2.3 protein.
          Length = 1096

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = +3

Query: 276 ATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHF 386
           A  ++ T T+E   + D+++VAA K+ + + E V+ +
Sbjct: 93  APMVRRTTTEESAEVDDRELVAAVKSGKKITEAVDRW 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,620,809
Number of Sequences: 27780
Number of extensions: 261884
Number of successful extensions: 773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 736
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 769
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)