Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O08
(506 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi... 153 2e-38
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch... 153 2e-38
SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|... 91 7e-20
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz... 91 7e-20
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M... 91 7e-20
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro... 56 4e-09
SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyc... 36 0.003
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb... 36 0.005
SPAC22E12.11c |set3||histone lysine methyltransferase Set3|Schiz... 30 0.17
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ... 29 0.53
SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase ... 28 0.70
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 28 0.92
SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyc... 27 1.6
SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulat... 26 3.7
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 25 8.6
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 8.6
>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 153 bits (370), Expect = 2e-38
Identities = 74/122 (60%), Positives = 85/122 (69%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYS 274
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYT 86
Query: 275 TPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 454
TP LAVL+YYKV+++G + RLRREC CGA FMA +DR YCG+CH
Sbjct: 87 TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144
Query: 455 TM 460
T+
Sbjct: 145 TL 146
>SPAC589.10c |||ribomal-ubiquitin fusion protein
Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 150
Score = 153 bits (370), Expect = 2e-38
Identities = 74/122 (60%), Positives = 85/122 (69%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVXXXXXXXXXXXXXNYS 274
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV Y+
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGGKKRKKKTYT 86
Query: 275 TPXXXXXXXXXXXLAVLRYYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHS 454
TP LAVL+YYKV+++G + RLRREC CGA FMA +DR YCG+CH
Sbjct: 87 TPKKIKHKHKKVELAVLKYYKVEDDGSVKRLRREC--PNCGASTFMANHKDRLYCGRCHL 144
Query: 455 TM 460
T+
Sbjct: 145 TL 146
>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 128
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 382
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 27 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 103 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 146
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 179 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 222
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 255 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 298
Score = 91.5 bits (217), Expect = 7e-20
Identities = 42/44 (95%), Positives = 44/44 (100%)
Frame = +2
Query: 95 EAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV
Sbjct: 331 KSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 374
>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
protein modifier Ned8|Schizosaccharomyces pombe|chr
2|||Manual
Length = 78
Score = 55.6 bits (128), Expect = 4e-09
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +2
Query: 101 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
++++KEGIPP QQRLI+AGKQ+ D + Y+++ S LHLV
Sbjct: 29 RVEEKEGIPPSQQRLIYAGKQMADDKNAESYHLEGGSVLHLV 70
>SPAC26A3.16 |dph1|ucp5|UBA domain protein Dph1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 354
Score = 36.3 bits (80), Expect = 0.003
Identities = 16/35 (45%), Positives = 24/35 (68%)
Frame = +2
Query: 122 IPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 226
I ++QRLI+AG+ L+D +L Y IQ ++HLV
Sbjct: 39 IEKERQRLIYAGRVLKDEESLKTYKIQDGHSIHLV 73
>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 368
Score = 35.5 bits (78), Expect = 0.005
Identities = 13/36 (36%), Positives = 27/36 (75%)
Frame = +2
Query: 101 KIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKE 208
KIQ ++ ++Q+LI++G+ L D +T+ +YNI+++
Sbjct: 30 KIQTQQNYEVERQKLIYSGRILADDKTVGEYNIKEQ 65
>SPAC22E12.11c |set3||histone lysine methyltransferase
Set3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 859
Score = 30.3 bits (65), Expect = 0.17
Identities = 14/22 (63%), Positives = 15/22 (68%)
Frame = -1
Query: 176 DHLPTVYRRRSIFVDQEGCPPY 111
DHLP+V RRRSI D G P Y
Sbjct: 611 DHLPSVKRRRSIANDFHGKPDY 632
>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 582
Score = 28.7 bits (61), Expect = 0.53
Identities = 14/48 (29%), Positives = 21/48 (43%)
Frame = -1
Query: 227 ALSGASTPSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPYLESWLHFDI 84
A S + PS C + P+ + +VD + P L S LHF +
Sbjct: 29 AQSSSPLPSNSCREYSLPSHPSTHNSSVAYVDSQDNKPPLVSTLHFSL 76
>SPCC1322.13 |ade6|min1|phosphoribosylaminoimidazole carboxylase
Ade6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 552
Score = 28.3 bits (60), Expect = 0.70
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Frame = -2
Query: 217 ERR--LLLDIVIREGSTIFQLFTGEDQSLLIRRDALLILNLGFTLIFEVT*VCFRRFTNS 44
ERR +LLD+ S + + G D L +DA +IL+ F + +E+T V R +
Sbjct: 370 ERRYQMLLDVKDPVESPVVGIIMGSDSDLSKMKDAAVILD-EFKVPYELTIVSAHRTPDR 428
Query: 43 S*SYPHHAPSR 11
+Y A SR
Sbjct: 429 MVTYARTAASR 439
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 27.9 bits (59), Expect = 0.92
Identities = 13/41 (31%), Positives = 25/41 (60%)
Frame = +2
Query: 62 ETYLSNLEYQSEAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 184
E Y S LEY + + +D+E + D+ L+ +++E+GR +
Sbjct: 504 ELYESGLEYDEDEE-EDEEDVDEDELDLMTDEQRMEEGRRM 543
>SPAC29B12.06c |rcd1||RNA-binding protein Rcd1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 283
Score = 27.1 bits (57), Expect = 1.6
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +2
Query: 329 YYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFKDDD 478
Y ++ +N + R C E F V++D H KC + ++ D
Sbjct: 228 YLRLSDNPRAREALRHCLPEPLRDATFAQVLKDDHNTKKCLAQLLINLSD 277
>SPAC31G5.13 |rpn11|pad1, sks1, bfr2, mts5|19S proteasome regulatory
subunit Rpn11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 308
Score = 25.8 bits (54), Expect = 3.7
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 71 LSNLEYQSEAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQK 205
+ +L Q ++Q++ + P+Q R+ + GKQ D + D +QK
Sbjct: 247 MKSLSEQYTERVQNEVTLSPEQLRIQYVGKQ--DPKKHLDAEVQK 289
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.6 bits (51), Expect = 8.6
Identities = 11/32 (34%), Positives = 15/32 (46%)
Frame = -1
Query: 206 PSGYCNQRGFDHLPTVYRRRSIFVDQEGCPPY 111
PS + RG + P+ RRR + G PY
Sbjct: 17 PSSFLKPRGLVYRPSQIRRRVSLLSLSGFHPY 48
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 24.6 bits (51), Expect = 8.6
Identities = 9/34 (26%), Positives = 16/34 (47%)
Frame = -1
Query: 194 CNQRGFDHLPTVYRRRSIFVDQEGCPPYLESWLH 93
CN++G + V R V+Q+ +W+H
Sbjct: 277 CNKKGLSYFKAVIRAFEWLVEQKLSKTRFSAWMH 310
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,835,253
Number of Sequences: 5004
Number of extensions: 31317
Number of successful extensions: 87
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 81
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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