Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O08
         (506 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              24   1.0  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   5.6  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   9.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   9.7  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +2

Query: 68  YLSNLEYQSEAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 184
           YL++     + KI  K  I PD + L+   KQ E G TL
Sbjct: 730 YLTDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 5.6
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 134 DQEGCPPYLESWLH 93
           D + CP   ESW H
Sbjct: 152 DVQECPLIFESWTH 165


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 5/16 (31%), Positives = 13/16 (81%)
 Frame = -3

Query: 321 TASLTFFFLCLIFLGV 274
           ++S++F+  C++ LG+
Sbjct: 196 SSSISFYVPCIVMLGI 211


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -3

Query: 54  LQIHRDPTHTMHPPD 10
           +QI   P H  HPP+
Sbjct: 457 IQIGHTPHHHPHPPE 471


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 20.6 bits (41), Expect = 9.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 341 DENGKIHRLRRECTGEQ 391
           + +GK+HR  R  TGE+
Sbjct: 158 EHSGKLHRHMRIHTGER 174


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,875
Number of Sequences: 438
Number of extensions: 2372
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13986774
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)