Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O07
(484 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 188 4e-49
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 188 4e-49
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 34 0.010
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.0
SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces ... 26 2.6
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar... 26 2.6
SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|ch... 26 3.4
SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein s... 25 6.0
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 6.0
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 6.0
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 7.9
SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase Ubp7|Schizosa... 25 7.9
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 7.9
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 7.9
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 188 bits (458), Expect = 4e-49
Identities = 87/132 (65%), Positives = 104/132 (78%)
Frame = +2
Query: 5 EEAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 184
E AFQKQ +F N K G R R K+VGLGFKTP EA+ G Y+DKKCPF G VSIRGR
Sbjct: 10 ERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGR 66
Query: 185 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGEC 364
ILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+C
Sbjct: 67 ILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQC 125
Query: 365 RPLSKTVRFNVL 400
RPLSKTVRFNVL
Sbjct: 126 RPLSKTVRFNVL 137
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 188 bits (458), Expect = 4e-49
Identities = 87/132 (65%), Positives = 104/132 (78%)
Frame = +2
Query: 5 EEAFQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSIRGR 184
E AFQKQ +F N K G R R K+VGLGFKTP EA+ G Y+DKKCPF G VSIRGR
Sbjct: 10 ERAFQKQPHIFQNAKKGAGR---RWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGR 66
Query: 185 ILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGEC 364
ILTG V KM RTI+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+C
Sbjct: 67 ILTGTVVSTKMHRTIIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQC 125
Query: 365 RPLSKTVRFNVL 400
RPLSKTVRFNVL
Sbjct: 126 RPLSKTVRFNVL 137
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 34.3 bits (75), Expect = 0.010
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +2
Query: 194 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 373
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 374 SKTVRFNVL 400
S T RF ++
Sbjct: 64 SATKRFEII 72
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 346 DVSDFHVPEARR*MNRHVPVSL 281
DV+ + VPEARR RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502
>SPAC6G9.02c |nop9||RNA-binding protein Nop9|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 655
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 475 FFFTYNEVYLELFERFFGTFAFRDL 401
FF N Y+EL + FG++AF L
Sbjct: 129 FFSALNGHYVELIQTTFGSYAFEKL 153
>SPAC25B8.04c |||mitochondrial splicing suppressor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 26.2 bits (55), Expect = 2.6
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 3/31 (9%)
Frame = -2
Query: 444 NFLKDFLEPLPLET---FSTLNLTVLESGLH 361
N LKD +EPL L T F++L +V +S LH
Sbjct: 323 NVLKDSIEPLLLPTVNKFASLGWSVDDSNLH 353
>SPAC5H10.02c |||ThiJ domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.8 bits (54), Expect = 3.4
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 14 FQKQATVFLNRKGGMKRKDMRHSKNVGLGFKTPREAVEG-TYIDKKCPFTGNVSIRGRIL 190
+ K T F N+ G K M K G+ A G T+ID P I G+I+
Sbjct: 163 YHKHVTAF-NKAGEEKMGVMDELKKRGMKSLNEIFAEAGATFIDPPNPNVNFTQIDGKIV 221
Query: 191 TGV 199
TGV
Sbjct: 222 TGV 224
>SPAC4F8.02c |mrpl40|SPAC644.02|mitochondrial ribosomal protein
subunit L40|Schizosaccharomyces pombe|chr 1|||Manual
Length = 279
Score = 25.0 bits (52), Expect = 6.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = -1
Query: 94 TNILRMSHILPFHAPLAIEEH 32
TN+L+M LP H I EH
Sbjct: 16 TNVLKMKKPLPLHMRTKIREH 36
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 6.0
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = +2
Query: 44 RKGGMKRKDMRHSKNVGLGFKTPRE 118
R G D++ ++N+G+ F+TP +
Sbjct: 194 RPGDHNSTDLKFAENIGIKFETPEQ 218
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +2
Query: 329 VEIGDIVTIGECRPLSKTVRFNVL 400
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 7.9
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 331 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 242
H PE NR ++++K+V+F+Q+ E++
Sbjct: 49 HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78
>SPAC23G3.08c |ubp7||ubiquitin C-terminal hydrolase
Ubp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 875
Score = 24.6 bits (51), Expect = 7.9
Identities = 11/40 (27%), Positives = 21/40 (52%)
Frame = -2
Query: 141 SMYVPSTASRGVLKPRPTFLECLISFLFMPPLRLRNTVAC 22
S++ S+ S +++ T ++CL +F + L N AC
Sbjct: 658 SIFSESSLSSPIIEEPKTLIDCLKNFTHVEELSGENMFAC 697
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 7.9
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = -1
Query: 301 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 170
+HV + L FR I DN +LHF H ++ QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 7.9
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 393 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 274
L+ + + L SP+ T++ + L G D+FL FSN
Sbjct: 6 LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,961,145
Number of Sequences: 5004
Number of extensions: 41612
Number of successful extensions: 134
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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