Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O07
         (484 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical pr...   194   3e-50
AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical ...    29   1.8  
Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical pr...    27   5.4  
U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical pr...    27   7.1  

>Z73426-1|CAA97792.1|  155|Caenorhabditis elegans Hypothetical
           protein F40F11.1 protein.
          Length = 155

 Score =  194 bits (473), Expect = 3e-50
 Identities = 92/135 (68%), Positives = 105/135 (77%), Gaps = 3/135 (2%)
 Frame = +2

Query: 5   EEAFQKQATVFLNRKGGM---KRKDMRHSKNVGLGFKTPREAVEGTYIDKKCPFTGNVSI 175
           E AF KQ TV LN K  +    +K  R+ + VGLGFK PR+AVEGTYIDKKCP+ GNV I
Sbjct: 6   ERAFLKQPTVNLNNKARILAGSKKTPRYIREVGLGFKAPRDAVEGTYIDKKCPWAGNVPI 65

Query: 176 RGRILTGVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTI 355
           RG ILTGVV K KM RTIV+RRDYLHY+ KY R+EKRH+N+  H SP FRD+  GD+VTI
Sbjct: 66  RGMILTGVVLKNKMTRTIVVRRDYLHYIKKYRRYEKRHKNVPAHCSPAFRDIHPGDLVTI 125

Query: 356 GECRPLSKTVRFNVL 400
           GECRPLSKTVRFNVL
Sbjct: 126 GECRPLSKTVRFNVL 140


>AL031629-5|CAA20979.1|   99|Caenorhabditis elegans Hypothetical
           protein Y106G6D.6 protein.
          Length = 99

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 201 FRK*KCSEQLLSGAIISITCLNTTDL 278
           F   KC EQ +SG +++  C NT DL
Sbjct: 45  FHANKCFEQNVSGQLLTFCCCNTDDL 70


>Z81528-4|CAB04281.1|  575|Caenorhabditis elegans Hypothetical
           protein F35E2.5 protein.
          Length = 575

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -2

Query: 243 SRLITIVRCIFIF*TTPVRIRPRMDTLPVNGHFLSMYVPSTASRGVLK 100
           ++ +T  +   +  TTPV++ P   TLP     L++   +TA+R   K
Sbjct: 341 TKRLTTTKATTVLTTTPVKVTPATTTLPTTS--LALETTTTATRTTAK 386


>Z98853-4|CAB57905.1|  301|Caenorhabditis elegans Hypothetical
           protein R08A2.4 protein.
          Length = 301

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -1

Query: 295 VPVSLLKSVVFRQVMEIIAPDNNCSLHFHFLNNACQD 185
           + +SLL+ +   QV+  I P+   +L+FH  +  C D
Sbjct: 148 IDISLLEYLQAVQVLTYIHPETLKTLNFHIYSEKCND 184


>U42830-2|AAC48274.1|  243|Caenorhabditis elegans Hypothetical
           protein C53B7.3 protein.
          Length = 243

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -1

Query: 235 DNNCSLHFHFLNNACQDTASD 173
           DN C L+   +NN CQ T S+
Sbjct: 169 DNTCGLNQRCVNNMCQSTGSN 189


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,108,981
Number of Sequences: 27780
Number of extensions: 247010
Number of successful extensions: 654
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 654
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)