Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O06
(407 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 167 7e-41
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 145 3e-34
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 144 5e-34
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 138 4e-32
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 129 2e-29
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 125 4e-28
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 120 9e-27
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 120 1e-26
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 119 3e-26
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 118 5e-26
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 111 4e-24
UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n... 102 2e-21
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 102 2e-21
UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1; Encepha... 85 7e-16
UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n... 84 1e-15
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 74 1e-12
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 59 4e-08
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 53 2e-06
UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1; Staphy... 46 2e-04
UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3; Desulf... 45 5e-04
UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga ... 44 0.002
UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4; Pyrobac... 43 0.003
UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1; Sulfol... 43 0.003
UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2; Sulfol... 42 0.006
UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1; Thermof... 41 0.011
UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1; Arabido... 39 0.034
UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza s... 39 0.045
UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;... 36 0.24
UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner... 33 2.9
UniRef50_UPI000023D9FA Cluster: hypothetical protein FG09640.1; ... 32 5.1
UniRef50_Q83XP1 Cluster: Putative beta-lactam synthetase; n=1; S... 32 5.1
UniRef50_A1ZIW8 Cluster: Putative uncharacterized protein; n=1; ... 31 6.8
UniRef50_A0TLH8 Cluster: Putative uncharacterized protein; n=3; ... 31 8.9
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 167 bits (406), Expect = 7e-41
Identities = 77/121 (63%), Positives = 91/121 (75%)
Frame = +3
Query: 45 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 224
N M+ HFHKDWQR V TWFNQPAR+ RR++ R +RP+VRCPTVR
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVR 65
Query: 225 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 404
YHTKVRAGRGF+L E+R +G++ ARTIGI+VDPRRRNKS ESLQ NVQRLKEYR++LI
Sbjct: 66 YHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLI 125
Query: 405 L 407
L
Sbjct: 126 L 126
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 145 bits (351), Expect = 3e-34
Identities = 65/123 (52%), Positives = 88/123 (71%)
Frame = +3
Query: 39 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 218
K NN++ N HF KDWQR VK WF+QP + RR+ R LRP VRCPT
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR-EAKAAKLGLRPVQLLRPAVRCPT 62
Query: 219 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 398
+RY+TK+R+GRGFT+ E++A+GL +AR++GI VD RRRNKS ESL++NV+R+K Y+AR
Sbjct: 63 LRYNTKIRSGRGFTIEEVKAAGLGKKYARSVGIPVDHRRRNKSEESLKLNVERIKAYQAR 122
Query: 399 LIL 407
L++
Sbjct: 123 LVV 125
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 144 bits (350), Expect = 5e-34
Identities = 66/124 (53%), Positives = 87/124 (70%)
Frame = +3
Query: 33 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 212
M + NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R LRP+V C
Sbjct: 1 MVRHNNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALRAKKSRQLAPKPTEL-LRPLVHC 59
Query: 213 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 392
P+ RY +KVRAGRGFT +E++ +G++ +AR+ G+AVDPRRRN+ ES+ N+QRL EY+
Sbjct: 60 PSERYKSKVRAGRGFTFQELKQAGMSDKYARSFGVAVDPRRRNRCTESIAANIQRLIEYK 119
Query: 393 ARLI 404
+RLI
Sbjct: 120 SRLI 123
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 138 bits (334), Expect = 4e-32
Identities = 64/123 (52%), Positives = 85/123 (69%)
Frame = +3
Query: 39 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 218
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R LRPVV T
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVARQKKAVKIFPRPTSGPLRPVVHGQT 61
Query: 219 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 398
++Y+ KVRAG+GFTL E++ +G+ A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+
Sbjct: 62 LKYNMKVRAGKGFTLEELKVAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAK 121
Query: 399 LIL 407
L++
Sbjct: 122 LVV 124
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 129 bits (312), Expect = 2e-29
Identities = 63/113 (55%), Positives = 79/113 (69%)
Frame = +3
Query: 69 FHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAG 248
FHKDWQR V+ F+QP R+HRR++ R+ LRPVVRCPTV+Y+ +VR G
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARLAKAAAVAPRPVDK-LRPVVRCPTVKYNRRVRVG 89
Query: 249 RGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLIL 407
RGFTL E++ +G+ ART+GIAVD RR N S ESL NV RLK+Y+ARLIL
Sbjct: 90 RGFTLAELKEAGIPKKLARTVGIAVDHRRVNYSKESLVANVARLKDYKARLIL 142
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 125 bits (301), Expect = 4e-28
Identities = 65/131 (49%), Positives = 84/131 (64%), Gaps = 6/131 (4%)
Frame = +3
Query: 33 MGKGNNMIPNGHFHKDWQRF------VKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXL 194
M KGNN IP+ H K W VK +FNQPA++ RR++ R+ L
Sbjct: 12 MPKGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRLLKAKKIFPRPLKA-L 70
Query: 195 RPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQ 374
RP V CPTVRY+ K R GRGF+L E++A+G+ P +ARTIGI VD RR+NKS E + INVQ
Sbjct: 71 RPQVNCPTVRYNMKRRLGRGFSLEELKAAGVKPRYARTIGIRVDRRRKNKSEEGMNINVQ 130
Query: 375 RLKEYRARLIL 407
RLK Y ++L+L
Sbjct: 131 RLKTYMSKLVL 141
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 120 bits (290), Expect = 9e-27
Identities = 57/116 (49%), Positives = 79/116 (68%)
Frame = +3
Query: 60 NGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 239
N HF K WQ V+ F+Q ++ R+Q+R+ LRPVVR PTV+Y+ KV
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRLRKAAKIAPRPIDA-LRPVVRAPTVKYNRKV 69
Query: 240 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLIL 407
RAGRGFTL E++A G+ P +ARTIGI+VD RR+NKS E+ NV RL+EY+++L++
Sbjct: 70 RAGRGFTLAELKAVGIAPKYARTIGISVDHRRQNKSQETFDANVARLQEYKSKLVI 125
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 120 bits (289), Expect = 1e-26
Identities = 59/123 (47%), Positives = 81/123 (65%)
Frame = +3
Query: 39 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 218
K N +PN H K W RFVKT++NQPA + RR+Q R LRPVVR T
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAK-RRRQLRRRAQALSASPRPVELLRPVVRGQT 60
Query: 219 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 398
++Y++ + GRGF+L E++ +GLN +FART+GI+VD RRRN + E L NV+RLK Y ++
Sbjct: 61 IKYNSVQKLGRGFSLIELKEAGLNAAFARTVGISVDHRRRNLNQEELNNNVKRLKAYLSK 120
Query: 399 LIL 407
L+L
Sbjct: 121 LVL 123
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 119 bits (286), Expect = 3e-26
Identities = 58/121 (47%), Positives = 78/121 (64%)
Frame = +3
Query: 45 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 224
NN+IPN H+HK+++R++KTW+NQP R+ R+ R LRP+V PT R
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRRIAR-QKAVAEAGFRPVGMLRPIVHPPTQR 62
Query: 225 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 404
Y+ K R GRGFTL E+ A G+N A +IGIAVD RR + S E+ QINV RLK+Y ++
Sbjct: 63 YNMKTRLGRGFTLEELSACGINKKAAMSIGIAVDHRRTDLSEETFQINVDRLKKYINGIV 122
Query: 405 L 407
L
Sbjct: 123 L 123
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 118 bits (284), Expect = 5e-26
Identities = 58/120 (48%), Positives = 74/120 (61%)
Frame = +3
Query: 45 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 224
NN IPN H K W VKT+F+ PAR RR+ R LRP+VRCPTVR
Sbjct: 26 NNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNARNLRAKKIAPRPAEGPLRPIVRCPTVR 85
Query: 225 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 404
Y+ K R GRGFT +E+ A+G +P+ AR GIAVD RR + ++ NV+RL+ Y+ARLI
Sbjct: 86 YNMKTRLGRGFTPKELVAAGFDPALARFQGIAVDARRAHSKDAMVKQNVERLQAYKARLI 145
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 111 bits (268), Expect = 4e-24
Identities = 56/121 (46%), Positives = 76/121 (62%)
Frame = +3
Query: 45 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVR 224
NN++PN H HK WQR+V+ FN+ +R +R+ R L PVV CPT R
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRRLLR-EKRRKQNGGTPIEKLHPVVHCPTQR 63
Query: 225 YHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 404
Y+ K R G+GFTL EI+A L PS AR+IGI VD RR+N+ ESL+ N +RL++Y L+
Sbjct: 64 YNYKTRLGKGFTLEEIKAVKLTPSAARSIGIIVDKRRKNRCEESLKENAERLQKYLNSLV 123
Query: 405 L 407
+
Sbjct: 124 M 124
>UniRef50_Q4N9B5 Cluster: 60S ribosomal protein L13e, putative; n=4;
Piroplasmida|Rep: 60S ribosomal protein L13e, putative -
Theileria parva
Length = 205
Score = 102 bits (245), Expect = 2e-21
Identities = 55/125 (44%), Positives = 75/125 (60%)
Frame = +3
Query: 33 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 212
M K NNM+ + H K RFVK NQ ++ RR+ R LRP+V
Sbjct: 1 MVKHNNMLSDVHRVKCSHRFVKPVLNQAGKKKRRRLAR-QRKAAASGLTPTGYLRPLVHM 59
Query: 213 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 392
P+ RY+ K+R GRGFTL+E++ +GL AR++G+AVD RR NK ESL +NV RLK Y
Sbjct: 60 PSRRYNYKLRFGRGFTLQELKVAGLGKKVARSVGVAVDHRRTNKCAESLNLNVNRLKTYL 119
Query: 393 ARLIL 407
++L+L
Sbjct: 120 SKLVL 124
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 102 bits (245), Expect = 2e-21
Identities = 53/113 (46%), Positives = 68/113 (60%)
Frame = +3
Query: 69 FHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKVRAG 248
F KDW+ V TW QP R+ RR Q R+ L+P V C R++ K+R G
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRVEKAKSVFPATIKS-LKPSVHCMNQRFNYKLRLG 70
Query: 249 RGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLIL 407
RGF+L+E+RA+ ++ + ARTIGIAVDPRR+ S E L N QRL EY RL L
Sbjct: 71 RGFSLKELRAAKIDKNLARTIGIAVDPRRKESSKECLTRNAQRLTEYMNRLCL 123
>UniRef50_Q8SSC1 Cluster: 60S RIBOSOMAL PROTEIN L13; n=1;
Encephalitozoon cuniculi|Rep: 60S RIBOSOMAL PROTEIN L13
- Encephalitozoon cuniculi
Length = 163
Score = 84.6 bits (200), Expect = 7e-16
Identities = 44/123 (35%), Positives = 65/123 (52%)
Frame = +3
Query: 39 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 218
KGN+ +PN HF K + + P + R + LRP+VRCPT
Sbjct: 2 KGNHALPNNHFRKTSLKI--RIHHDPETKARVMAEKKLRKAKALFPMPLKKLRPIVRCPT 59
Query: 219 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 398
++Y+ R GRGFT E +GL+ AR +GIAVD RRR+ + E+ NV+R+K Y +
Sbjct: 60 IKYNRNERLGRGFTAAECEKAGLDYRHARRLGIAVDLRRRDTNQEAFDKNVERIKTYLGK 119
Query: 399 LIL 407
+ +
Sbjct: 120 ITI 122
>UniRef50_UPI0000DC2213 Cluster: UPI0000DC2213 related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DC2213 UniRef100 entry -
Rattus norvegicus
Length = 173
Score = 83.8 bits (198), Expect = 1e-15
Identities = 37/72 (51%), Positives = 52/72 (72%)
Frame = +3
Query: 192 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 371
+RP+VRCPTVRYHTKVR GRGF+L EIR +G++ ARTI I+VDP+++ K E +
Sbjct: 13 IRPIVRCPTVRYHTKVRGGRGFSLEEIRLAGIHKKMARTIDISVDPKKKKKKKERKKEKN 72
Query: 372 QRLKEYRARLIL 407
+R+ E + I+
Sbjct: 73 ERVTETNQKDII 84
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 73.7 bits (173), Expect = 1e-12
Identities = 35/97 (36%), Positives = 56/97 (57%), Gaps = 1/97 (1%)
Frame = +3
Query: 63 GHFHKDWQRFVKTWFNQPARR-HRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHTKV 239
GHF K W+ V T FNQP + RRK + L+P+V+CPT ++TK+
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIRKNKKKNFLKKAIFYKKLKPLVKCPTRMHNTKI 69
Query: 240 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSV 350
+ GRGF+++EI+ S + A + GI++D RR+ ++
Sbjct: 70 KLGRGFSIQEIKKSMIKLKTATSYGISIDKRRKKSNI 106
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 58.8 bits (136), Expect = 4e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +3
Query: 54 IPNGHFHKDWQRFVKTWFNQPARRHRRK 137
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 53.2 bits (122), Expect = 2e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +3
Query: 45 NNMIPNGHFHKDWQRFVKTWFNQPARRHRR 134
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_A3DKW5 Cluster: 50S ribosomal protein L13e; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein
L13e - Staphylothermus marinus (strain ATCC 43588 / DSM
3639 / F1)
Length = 86
Score = 46.4 bits (105), Expect = 2e-04
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 4/72 (5%)
Frame = +3
Query: 198 PVVRCPTVRYH----TKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQI 365
P+VR P +R H +R GRGF+ +E+ A GL+ A+ +G+ +D RRR +
Sbjct: 10 PIVRKPMLRKHGGLSPGLRVGRGFSKKELEAVGLDLKTAKKLGLRIDKRRRTIH----EW 65
Query: 366 NVQRLKEYRARL 401
NVQ L++Y ++
Sbjct: 66 NVQALRDYLTKI 77
>UniRef50_Q9YEN9 Cluster: 50S ribosomal protein L13e; n=3;
Desulfurococcales|Rep: 50S ribosomal protein L13e -
Aeropyrum pernix
Length = 80
Score = 45.2 bits (102), Expect = 5e-04
Identities = 24/53 (45%), Positives = 36/53 (67%), Gaps = 3/53 (5%)
Frame = +3
Query: 237 VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNK---SVESLQINVQRLKE 386
VR GRGF+L E+ +GL+ AR +G+ VD RRR +VE+L+ ++RL+E
Sbjct: 23 VRRGRGFSLGELAEAGLDAKKARKLGLHVDTRRRTVHPWNVEALKKYIERLRE 75
>UniRef50_A3H6W8 Cluster: Ribosomal protein L13; n=1; Caldivirga
maquilingensis IC-167|Rep: Ribosomal protein L13 -
Caldivirga maquilingensis IC-167
Length = 144
Score = 43.6 bits (98), Expect = 0.002
Identities = 22/57 (38%), Positives = 39/57 (68%)
Frame = +3
Query: 234 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLI 404
K++ GRGF++ EI+A L + AR +GI VD RR++ + + NV+ L+EY ++++
Sbjct: 17 KMKQGRGFSISEIKAINLTVNEARLLGIPVDTRRKS----TWEWNVKALQEYVSKVV 69
>UniRef50_Q8ZWS7 Cluster: 60S ribosomal protein L13; n=4;
Pyrobaculum|Rep: 60S ribosomal protein L13 - Pyrobaculum
aerophilum
Length = 159
Score = 42.7 bits (96), Expect = 0.003
Identities = 28/74 (37%), Positives = 44/74 (59%), Gaps = 6/74 (8%)
Frame = +3
Query: 195 RPVVRCPTVRYH---TKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRN---KSVES 356
+P+V+ P H K + GRGF++ E+RA GL+ AR +GI VD RR +++E+
Sbjct: 6 KPLVKTPAKITHGGVVKWKYGRGFSIGELRALGLSVDQARLLGIPVDERRETSWPQNIEA 65
Query: 357 LQINVQRLKEYRAR 398
L+ + L E RA+
Sbjct: 66 LRKWLIDLLEGRAQ 79
>UniRef50_P58469 Cluster: 50S ribosomal protein L13e; n=1;
Sulfolobus tokodaii|Rep: 50S ribosomal protein L13e -
Sulfolobus tokodaii
Length = 77
Score = 42.7 bits (96), Expect = 0.003
Identities = 19/68 (27%), Positives = 43/68 (63%), Gaps = 3/68 (4%)
Frame = +3
Query: 192 LRPVVRCPTVRYHTK---VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQ 362
+ P+V+ P R+ + + G+GF+L+E++ SG + A+ + + +D RR+ E+++
Sbjct: 2 VEPIVKRPHYRFEIRKKDTKIGKGFSLKELKESGFSVQEAKKLRVRIDKRRKTSYPENVE 61
Query: 363 INVQRLKE 386
+ +++LKE
Sbjct: 62 V-LKKLKE 68
>UniRef50_Q97W05 Cluster: 50S ribosomal protein L13e; n=2;
Sulfolobus solfataricus|Rep: 50S ribosomal protein L13e
- Sulfolobus solfataricus
Length = 79
Score = 41.5 bits (93), Expect = 0.006
Identities = 25/54 (46%), Positives = 36/54 (66%)
Frame = +3
Query: 240 RAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARL 401
R GRGF++ E+ +GLN + AR +GI VD RR KSV + NV+ LK++ +L
Sbjct: 25 RIGRGFSVGELEKAGLNINKARKLGIFVDIRR--KSVH--EENVETLKKFSEQL 74
>UniRef50_A1RY56 Cluster: 60S ribosomal protein L13; n=1;
Thermofilum pendens Hrk 5|Rep: 60S ribosomal protein L13
- Thermofilum pendens (strain Hrk 5)
Length = 157
Score = 40.7 bits (91), Expect = 0.011
Identities = 22/54 (40%), Positives = 36/54 (66%), Gaps = 3/54 (5%)
Frame = +3
Query: 237 VRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRN---KSVESLQINVQRLKEY 389
++ GRGF+ E++A GL AR +GI VD RR+ ++VE+L+ ++ LKE+
Sbjct: 30 LKVGRGFSEGEVKALGLTVKEARLLGIYVDERRKTVHPENVEALRSWLKALKEH 83
>UniRef50_Q6LAB9 Cluster: 60S ribosomal protein L13; n=1;
Arabidopsis thaliana|Rep: 60S ribosomal protein L13 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 87
Score = 39.1 bits (87), Expect = 0.034
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 192 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGL 287
LRPVV T++Y+ KV +GFTL E++A+G+
Sbjct: 52 LRPVVHGQTLKYNMKVSTXKGFTLEELKAAGI 83
>UniRef50_A2YRI3 Cluster: 60S ribosomal protein L13; n=2; Oryza
sativa|Rep: 60S ribosomal protein L13 - Oryza sativa
subsp. indica (Rice)
Length = 138
Score = 38.7 bits (86), Expect = 0.045
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = +3
Query: 198 PVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSF 299
P+V+C T++Y+ K RAGRGF L E++ F
Sbjct: 47 PIVQCQTLKYNMKSRAGRGFILEELKVLSSRSGF 80
>UniRef50_UPI00015BAF4C Cluster: LSU ribosomal protein L13E; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L13E - Ignicoccus hospitalis KIN4/I
Length = 96
Score = 36.3 bits (80), Expect = 0.24
Identities = 26/66 (39%), Positives = 39/66 (59%)
Frame = +3
Query: 192 LRPVVRCPTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINV 371
L PV+R + K+R GRGF+ E+ A GL+ A +GI +D RR K+V + NV
Sbjct: 29 LTPVLRKDAGK-KPKMRRGRGFSKGELEAVGLDFKKALKMGIPIDKRR--KTVH--EWNV 83
Query: 372 QRLKEY 389
+ LK++
Sbjct: 84 EALKKW 89
>UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner
membrane subunit; n=8; Burkholderiales|Rep: Polar amino
acid ABC transporter, inner membrane subunit -
Polynucleobacter sp. QLW-P1DMWA-1
Length = 260
Score = 32.7 bits (71), Expect = 2.9
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = -1
Query: 137 LSTMTTSWLIKPCLHKSLPILMEMAIWYHIIP 42
L ++T+W+ L +++PIL+++ +WYH+IP
Sbjct: 79 LVRLSTTWVE---LFRNIPILVQVFLWYHVIP 107
>UniRef50_UPI000023D9FA Cluster: hypothetical protein FG09640.1;
n=1; Gibberella zeae PH-1|Rep: hypothetical protein
FG09640.1 - Gibberella zeae PH-1
Length = 1253
Score = 31.9 bits (69), Expect = 5.1
Identities = 17/39 (43%), Positives = 22/39 (56%)
Frame = -3
Query: 150 LFYSAFYDDDELAD*TMSSQIFANPYGNGHLVSYYSLYP 34
L + YD D L D TMS++ N GN H+VS+Y P
Sbjct: 226 LLKTLIYDSDALQDLTMSAR---NRLGNIHVVSFYETLP 261
>UniRef50_Q83XP1 Cluster: Putative beta-lactam synthetase; n=1;
Streptomyces cattleya|Rep: Putative beta-lactam
synthetase - Streptomyces cattleya
Length = 458
Score = 31.9 bits (69), Expect = 5.1
Identities = 17/37 (45%), Positives = 23/37 (62%), Gaps = 4/37 (10%)
Frame = -2
Query: 337 RLRGSTAIP----IVLAKEGFNPEALISRRVNPLPAR 239
R G TA+P + LA GF+ E L++RR + LPAR
Sbjct: 132 RFAGVTAVPAGTAVTLAVAGFDTEPLLTRRYHRLPAR 168
>UniRef50_A1ZIW8 Cluster: Putative uncharacterized protein; n=1;
Microscilla marina ATCC 23134|Rep: Putative
uncharacterized protein - Microscilla marina ATCC 23134
Length = 50
Score = 31.5 bits (68), Expect = 6.8
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 348 LICCVYVGQQQYQLFWQK 295
L+ C+Y+G+Q YQ FW K
Sbjct: 11 LVACIYLGKQLYQTFWGK 28
>UniRef50_A0TLH8 Cluster: Putative uncharacterized protein; n=3;
Burkholderia|Rep: Putative uncharacterized protein -
Burkholderia ambifaria MC40-6
Length = 508
Score = 31.1 bits (67), Expect = 8.9
Identities = 18/52 (34%), Positives = 30/52 (57%)
Frame = +3
Query: 243 AGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 398
+GRG R +RA+ L+P A + IA+ R R + E L+++++R AR
Sbjct: 50 SGRGADRRHLRAARLHPEEAARLRIALSARARGR--EGLRVDLRRRHARLAR 99
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 390,262,263
Number of Sequences: 1657284
Number of extensions: 6869778
Number of successful extensions: 16569
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 16321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16551
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 18196175969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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