Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O06
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   142   2e-35
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   1.1  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   3.4  
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca...    25   6.0  
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p...    24   7.9  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  142 bits (344), Expect = 2e-35
 Identities = 67/118 (56%), Positives = 84/118 (71%)
 Frame = +3

Query: 54  IPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHT 233
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 234 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLIL 407
           KVRAGRGFTL E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIV 125


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 155 LFYSILLSTMTTSWLIKPCLHKS--LPILMEMAIWYHIIPFTH 33
           L  S+ L  +T +WL++    +S   P  + +A W  I  FTH
Sbjct: 204 LAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTH 246


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +3

Query: 288 NPSFARTIGIAVDPRRRNKSVESLQINV 371
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
            synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 2410

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 161  FSLFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWY 54
            FSL +    +  T  W+ + CL + +  +   A+WY
Sbjct: 2094 FSLNFGEEGAVQTRIWVFRACLVQGVQQVWSAALWY 2129


>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 145

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 9   LRSGKSFKMGKGNNMIPNGHFHKDWQRFVKTWFN 110
           L+  +  K  K    IP GH  +DW   V +  N
Sbjct: 29  LKEERKRKKRKNKYKIPPGHTQQDWDALVASGKN 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,629,058
Number of Sequences: 5004
Number of extensions: 28923
Number of successful extensions: 73
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)