Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O06
(407 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86... 152 1e-37
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880... 151 3e-37
04_04_0944 - 29557360-29557485,29557570-29557698,29557875-295579... 29 1.9
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008... 27 4.3
05_04_0020 - 17199627-17199947,17200129-17200203,17200301-172003... 27 4.3
11_08_0005 + 27536091-27536761,27539697-27539890,27540097-275402... 27 5.7
09_02_0574 - 10820107-10820154,10820313-10820432,10820608-108207... 27 7.6
>06_01_0110 -
866728-866952,867035-867193,867315-867448,868225-868333
Length = 208
Score = 152 bits (368), Expect = 1e-37
Identities = 69/125 (55%), Positives = 90/125 (72%)
Frame = +3
Query: 33 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 212
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 213 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 392
T++Y+ K RAGRGFTL E++A+G+ FA TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKFAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 393 ARLIL 407
A+L++
Sbjct: 121 AKLVI 125
>03_05_0108 -
20887146-20887370,20887460-20887618,20887930-20888063,
20888597-20888705
Length = 208
Score = 151 bits (365), Expect = 3e-37
Identities = 68/125 (54%), Positives = 90/125 (72%)
Frame = +3
Query: 33 MGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRC 212
M K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+ R LRP+V+C
Sbjct: 1 MVKHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRRIARQKKAVKIFPRPTSGPLRPIVQC 60
Query: 213 PTVRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYR 392
T++Y+ K RAGRGFTL E++A+G+ +A TIGI+VD RR+N+S+E LQ NVQRLK Y+
Sbjct: 61 QTLKYNMKSRAGRGFTLEELKAAGIPKKYAPTIGISVDHRRKNRSLEGLQANVQRLKTYK 120
Query: 393 ARLIL 407
A+L++
Sbjct: 121 AKLVI 125
>04_04_0944 -
29557360-29557485,29557570-29557698,29557875-29557917,
29558321-29558400,29558493-29558804
Length = 229
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/43 (32%), Positives = 22/43 (51%)
Frame = +3
Query: 18 GKSFKMGKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 146
GKS +MG GN IP+ H ++ R + + + KQN+
Sbjct: 183 GKSIRMGSGNRRIPSAHESREKLRNSDIFKRRLDEPNDEKQNK 225
>05_05_0042 -
21798255-21798871,21799400-21799777,21799861-21800820,
21800918-21800957,21801471-21801766,21802696-21802774,
21803013-21803100,21803189-21803273,21803364-21803625,
21803720-21805027,21806187-21806393,21807288-21807519,
21808267-21808353,21808427-21808735,21808879-21808957,
21809788-21809867,21809952-21810029,21810744-21810831,
21811102-21811241,21811342-21811415,21812043-21812125,
21812403-21812516,21813975-21814136,21814377-21814641
Length = 2036
Score = 27.5 bits (58), Expect = 4.3
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 12 RSGKSFKMGKGNNMIPNGHFHKDWQRFVKTWFN 110
RS K+ + NN++ + H H + F+ TW N
Sbjct: 232 RSSKAEQKDALNNIVLSAHLHLQSEGFLSTWTN 264
>05_04_0020 -
17199627-17199947,17200129-17200203,17200301-17200384,
17200483-17200562,17201354-17201508,17202602-17203215
Length = 442
Score = 27.5 bits (58), Expect = 4.3
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = -2
Query: 358 NDSTDLLRLRGSTAIPIVLAKEGFNPEALISRRVNPLPARTFV**RT-VGQRTTGLR 191
+ ST GSTA LA+ F+ E +SRR LPAR FV + +G + GLR
Sbjct: 73 SSSTPAAAAAGSTAAN-PLAR--FSVEPAVSRRQQQLPARQFVGGKVPLGLKRKGLR 126
>11_08_0005 +
27536091-27536761,27539697-27539890,27540097-27540255,
27540385-27541493
Length = 710
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -3
Query: 399 DELYIPSTFEH*SVMIPLICCVYVGQQQYQLFWQKKGSIQKPL 271
DEL + S +H +V+ L CC+ + L + GS++K L
Sbjct: 472 DELRVQSLIQHENVVTLLGCCMETEEPTLILEFIPNGSLEKKL 514
>09_02_0574 -
10820107-10820154,10820313-10820432,10820608-10820751,
10821197-10821248,10821475-10821556,10821872-10822076,
10822147-10822192,10823556-10823632
Length = 257
Score = 26.6 bits (56), Expect = 7.6
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = -1
Query: 107 KPCLHKSLPILMEMAIWYHIIPFTHFKRFTTSQ 9
K C KSL + M +WY I F +++ ++ +
Sbjct: 121 KVCHDKSLAPFLIMLVWYDIATFLAYRKLSSGE 153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,336,672
Number of Sequences: 37544
Number of extensions: 184327
Number of successful extensions: 395
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 391
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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