Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O06
(407 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal prote... 144 2e-35
U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal prote... 93 5e-20
Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical pr... 28 3.0
Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical pr... 28 3.0
AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal t... 28 3.0
AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal t... 28 3.0
AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein ... 27 5.2
>U88308-7|AAB42322.1| 207|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform a protein.
Length = 207
Score = 144 bits (349), Expect = 2e-35
Identities = 66/123 (53%), Positives = 86/123 (69%)
Frame = +3
Query: 39 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 218
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR VVRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 219 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 398
RY+TK R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+ N RLKEY+A+
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123
Query: 399 LIL 407
LIL
Sbjct: 124 LIL 126
>U88308-8|AAO61436.1| 88|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 13, isoform b protein.
Length = 88
Score = 93.5 bits (222), Expect = 5e-20
Identities = 41/84 (48%), Positives = 54/84 (64%)
Frame = +3
Query: 39 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 218
+GN M+ N HF K W + +KTWF+QPAR+ RR+QNR LR VVRCP
Sbjct: 4 RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63
Query: 219 VRYHTKVRAGRGFTLREIRASGLN 290
RY+TK R GRGF+L+E++A+ N
Sbjct: 64 KRYNTKTRLGRGFSLQELKAAEEN 87
>Z82078-7|CAB04947.3| 801|Caenorhabditis elegans Hypothetical
protein W09D6.6 protein.
Length = 801
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 155 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFKRF 21
LF+ IL + W +P SL A+ H IP T +K++
Sbjct: 111 LFFWILSLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLTDWKKY 155
>Z75532-6|CAA99813.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 140 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 51
LL+ + SW + P +H +LPIL I H
Sbjct: 56 LLAELLNSWFLIPVVHVNLPILRFTGILSH 85
>Z75530-9|CAA99797.2| 330|Caenorhabditis elegans Hypothetical
protein C47E8.2 protein.
Length = 330
Score = 27.9 bits (59), Expect = 3.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 140 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 51
LL+ + SW + P +H +LPIL I H
Sbjct: 56 LLAELLNSWFLIPVVHVNLPILRFTGILSH 85
>Z70038-7|CAA93886.2| 373|Caenorhabditis elegans Hypothetical
protein ZK1067.7 protein.
Length = 373
Score = 27.9 bits (59), Expect = 3.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +2
Query: 203 CSLPYCALSYKSSCRQRIYPT 265
CS P C S +SSC+Q PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224
>AF497514-1|AAM33381.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 155 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFKRF 21
LF+ IL + W +P SL A+ H IP T +K++
Sbjct: 111 LFFWILSLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLTDWKKY 155
>AF497513-1|AAM33380.1| 801|Caenorhabditis elegans heavy metal
tolerance factor 1 protein.
Length = 801
Score = 27.9 bits (59), Expect = 3.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = -1
Query: 155 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFKRF 21
LF+ IL + W +P SL A+ H IP T +K++
Sbjct: 111 LFFWILSLCSFSKWRNQPSTPISLAFAFSAALLIHCIPLTDWKKY 155
>AF490977-1|AAQ06435.1| 801|Caenorhabditis elegans ABC6 protein
protein.
Length = 801
Score = 27.1 bits (57), Expect = 5.2
Identities = 14/45 (31%), Positives = 20/45 (44%)
Frame = -1
Query: 155 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPFTHFKRF 21
LF+ IL W +P SL A+ H IP T +K++
Sbjct: 111 LFFWILSLCSFLKWRNQPSTPISLAFAFSAALLIHCIPLTDWKKY 155
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,904,770
Number of Sequences: 27780
Number of extensions: 162489
Number of successful extensions: 372
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 370
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 372
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 651753158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -