Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O05
         (496 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   2.7  
SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces pombe...    26   3.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   4.7  
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar...    25   4.7  
SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+ antip...    25   8.3  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   8.3  

>SPAC1071.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 338

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
 Frame = -3

Query: 338 SRLGVISSLCYRDRRNVNINFICFK*PIEFYYRT---LFRDFTFSNLHC*Q-KTC*LLLR 171
           SRL +I     R   NVN +      PIE+ + T   +F+ +  +N H     T  +LL 
Sbjct: 218 SRLSIIFENIARSLENVNFSKASKVIPIEWVFSTWCSIFQKYLMNNWHLRSISTLEVLLN 277

Query: 170 VPSTVNVLVFEC 135
             ST+  +   C
Sbjct: 278 TVSTIQSVSESC 289


>SPAC11D3.06 |||MatE family transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -1

Query: 289 LTLILFVLNSPLNFIIVHYLG 227
           + L+   LN  LNF++VHY G
Sbjct: 163 ILLVTSPLNVALNFLLVHYYG 183


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 121 GYYFTIFY*YENVVTLFLIIDLLEINY 41
           G +FT+++ + N V L + I ++++N+
Sbjct: 721 GAFFTLWFLFSNNVVLSMFIAVIQVNF 747


>SPBC530.14c |dsk1||SR protein-specific kinase
           Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 15/49 (30%), Positives = 21/49 (42%)
 Frame = +1

Query: 256 MGYLKQIKLMLTFRLSL*HRELITPKRELKNVTVMFLLHQRRVTHCYLP 402
           +G +KQI   L   L   HRE      +LK   V+  + Q  + H   P
Sbjct: 187 VGIVKQIAYQLLIALDYLHRECGIIHTDLKPENVLICIDQDALQHIEAP 235


>SPAC3A11.09 |sod22||plasma membrane alkali metal cation/H+
           antiporter Sod22|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = -1

Query: 211 IFTANKKHANYYYVCHRRSMFLFLNVDMEFGYYFTIFY*YENVVTLFLIIDL 56
           +F A  +    Y + H RSMF+ L   M FG+  +  + Y  +  L  +  L
Sbjct: 83  VFAAGAELPRAYMLRHWRSMFVMLLPVMIFGWLVSTGFMYALIPRLSFLESL 134


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 386 RIVIYQTIGANQTGTLYIERQSIYVIMSLFFN 481
           R ++Y     +  GTLY+   + YV+M  F N
Sbjct: 570 RSIVYSQKYGDDGGTLYVSTNNGYVLMFNFQN 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,820,647
Number of Sequences: 5004
Number of extensions: 34044
Number of successful extensions: 66
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)