Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O05
         (496 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0139 + 7122880-7122979,7123328-7123560,7123961-7124032,712...    31   0.67 
09_06_0055 - 20550889-20551531,20551612-20551889,20552035-205522...    27   6.3  

>02_02_0139 +
           7122880-7122979,7123328-7123560,7123961-7124032,
           7124257-7124334,7124529-7124579,7124654-7124703,
           7124807-7124915,7125023-7125223
          Length = 297

 Score = 30.7 bits (66), Expect = 0.67
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -3

Query: 356 TVTFFSSRLGVISSLCYRDRRNVNINFICF 267
           T   FSS L   SSLCY +++  N+NFICF
Sbjct: 93  TSNAFSSSLQ--SSLCYWNKQMGNLNFICF 120


>09_06_0055 -
           20550889-20551531,20551612-20551889,20552035-20552203,
           20552397-20552534,20553945-20553997,20554521-20554574,
           20556062-20556295,20556399-20556986,20557065-20557419,
           20557494-20557694,20557925-20557998,20558114-20558254,
           20558611-20558670,20558750-20558806,20559281-20559318,
           20559419-20559578
          Length = 1080

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +1

Query: 373 QRRVTHCYLPNHWR*SNRHPVHRKTIYLCHHV 468
           +R + + Y+PNH   ++ HP HR T    HHV
Sbjct: 818 ERLIVYDYMPNHSLLTHLHP-HRGTPSSHHHV 848


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,531,209
Number of Sequences: 37544
Number of extensions: 175601
Number of successful extensions: 285
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)