Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O05
         (496 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical pr...    28   4.3  
U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane p...    27   5.7  
AF047662-6|AAC04441.1|  185|Caenorhabditis elegans Hypothetical ...    27   9.9  

>Z81536-4|CAB04364.1|  310|Caenorhabditis elegans Hypothetical
           protein F40D4.5 protein.
          Length = 310

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/71 (23%), Positives = 34/71 (47%)
 Frame = -1

Query: 310 VIEIDEMLTLILFVLNSPLNFIIVHYLGTSHSVIFTANKKHANYYYVCHRRSMFLFLNVD 131
           V+ +  ++ L+  + N+ L F  +       +V F A   +   +++C +  M L L +D
Sbjct: 50  VLSVSHIICLLFEIPNAALLFTGIRL---KRNVCFPAISIYV--FFICFQAVMILMLVID 104

Query: 130 MEFGYYFTIFY 98
           +    +FT FY
Sbjct: 105 LLIIVFFTTFY 115


>U41007-7|AAA82268.3|  516|Caenorhabditis elegans Intramembrane
           protease (impas)family protein 3 protein.
          Length = 516

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
 Frame = -1

Query: 220 HSVIFTANKKHANYYYVCHRRSM-FLFLNVDMEFGYY 113
           H ++  +  +H ++Y+  H  SM +  L V + FG Y
Sbjct: 317 HIILLESFSQHMSFYFYYHEESMMYASLLVSLSFGLY 353


>AF047662-6|AAC04441.1|  185|Caenorhabditis elegans Hypothetical
           protein T22B2.2 protein.
          Length = 185

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/30 (36%), Positives = 20/30 (66%)
 Frame = -2

Query: 189 MLTIITCAIDGQCSCF*MSTWSSVIISLFS 100
           +L+I+T A+ GQCS +  S W  +I ++ +
Sbjct: 139 VLSILTSALIGQCSGWANSEWYLIIFNMLA 168


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,068,095
Number of Sequences: 27780
Number of extensions: 192435
Number of successful extensions: 361
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 356
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 361
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 935344784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)