Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O04
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch...    27   2.2  
SPCC613.11c |meu23|B13958-2|DUF1773 family protein 2|Schizosacch...    25   5.0  
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc...    25   6.6  
SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|ch...    25   8.7  

>SPBC18E5.10 |||iron sulfur cluster assembly protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -3

Query: 492 VLRPDTXIINRLYTNLSEILVYDP 421
           + R D  + +  Y NLSEIL YDP
Sbjct: 43  IRRIDDALADGEYENLSEILKYDP 66


>SPCC613.11c |meu23|B13958-2|DUF1773 family protein
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 254

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 346 GAEPGPDTPLTPAPRNKTRISRSEC 420
           G  P PD P   + ++  R+SRS+C
Sbjct: 186 GNNPDPDLPPITSVQDVDRLSRSQC 210


>SPCP1E11.04c |pal1||membrane associated protein Pal1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 425

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 4/47 (8%)
 Frame = +3

Query: 276 EGEYR--RASQEPSDRLDRPTVVSL-GS*TGTRHASYSRA-PEQNKN 404
           EG +R  R+S+EP D++DR  V  L GS +      +    P +N+N
Sbjct: 147 EGSHRPGRSSKEPLDQIDRLDVTGLYGSGSFHHDGPFDACRPHRNRN 193


>SPAC806.04c |||DUF89 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 440

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 11/39 (28%), Positives = 18/39 (46%)
 Frame = -3

Query: 468 INRLYTNLSEILVYDPAFGSRDSCFVPGRGSKRRVWSRF 352
           I+ ++   SE   YDP F  +DS     R +   +  R+
Sbjct: 120 ISLIFARYSEWKAYDPFFQQKDSTLKSSRAAVEELAGRY 158


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,551,761
Number of Sequences: 5004
Number of extensions: 24404
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)