Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O04
(509 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0565 - 19561078-19561425,19562253-19563746 31 0.54
07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520 30 1.2
02_04_0125 - 19982330-19982538,19983507-19983633,19983978-199840... 29 1.6
09_04_0214 + 15711576-15711891,15712615-15713903,15714410-157151... 29 2.9
03_02_0712 - 10600147-10600196,10600257-10600378,10600993-106014... 28 3.8
01_03_0237 + 14068713-14069315,14069654-14069914 28 5.0
11_07_0002 - 27171791-27172222 27 6.6
11_01_0646 - 5219358-5219377,5219718-5220459,5220749-5221072 27 6.6
09_02_0279 + 6702517-6702948 27 6.6
05_01_0235 - 1768049-1769634,1770695-1770815,1770965-1771033,177... 27 6.6
03_02_0613 - 9848514-9848539,9848942-9849200,9849326-9849365,984... 27 6.6
02_04_0512 + 23565210-23566058,23566824-23568224 27 6.6
06_01_0850 - 6472213-6473541,6474229-6474282,6474616-6474671,647... 27 8.8
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 27 8.8
>07_03_0565 - 19561078-19561425,19562253-19563746
Length = 613
Score = 31.1 bits (67), Expect = 0.54
Identities = 17/40 (42%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = -3
Query: 441 EILVYD-PAFGSRDSCFVPGRGSKRRVWSRFSSPRRRQSA 325
+ LV D P SR SC+VPGR S S ++P+RR+++
Sbjct: 367 DFLVADIPPPPSRRSCYVPGRRSVAAPPSHMATPQRRRNS 406
>07_03_0800 + 21600050-21600106,21601506-21602663,21603029-21603520
Length = 568
Score = 29.9 bits (64), Expect = 1.2
Identities = 15/35 (42%), Positives = 20/35 (57%)
Frame = +1
Query: 280 ASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPA 384
A+TGAR +P +G+L + AE PD L PA
Sbjct: 342 AATGARGETPRLKKVGKLVDLYLAEVAPDPSLRPA 376
>02_04_0125 -
19982330-19982538,19983507-19983633,19983978-19984053,
19984993-19985184,19985906-19986474
Length = 390
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 382 APRNKTRISRSECGIIN*NLTKISVKPIDYVCV 480
+PR KTR++ SE ++N L + P+ Y+ +
Sbjct: 124 SPRQKTRLTSSESSMVNAVLENVPSNPLQYLMI 156
>09_04_0214 +
15711576-15711891,15712615-15713903,15714410-15715117,
15715369-15715908
Length = 950
Score = 28.7 bits (61), Expect = 2.9
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +2
Query: 110 RLLHAALDEGGGAAASASHTRVTWGARVTRVTW 208
R + +D GGG AA+A RV G + R TW
Sbjct: 27 RGVDVVVDGGGGGAAAARRRRVEVGVILDRRTW 59
>03_02_0712 -
10600147-10600196,10600257-10600378,10600993-10601489,
10601663-10601851,10601936-10602099,10602193-10602446,
10602535-10602691,10602830-10602995,10603121-10603227,
10603305-10603478,10603594-10603689,10603781-10603862,
10603948-10604058,10604253-10604309,10604638-10604709,
10604799-10605041,10605195-10605341,10605381-10605616,
10605745-10605865
Length = 1014
Score = 28.3 bits (60), Expect = 3.8
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +1
Query: 253 ADTTRSMRRASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPAPRNKTRISRSECGIIN 432
+D + RRA A RR+ W+ R A P+ P R R + CG +N
Sbjct: 28 SDRDLASRRAEEAAARRNEAAGWLRRTVGAVAARDLPEEPSEEEFRLGLRNGQILCGALN 87
>01_03_0237 + 14068713-14069315,14069654-14069914
Length = 287
Score = 27.9 bits (59), Expect = 5.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +2
Query: 77 RAGRCALVSTARLLHAALDEGGG 145
R GR + +TARLL AA GGG
Sbjct: 83 RCGRKTVTTTARLLAAARSNGGG 105
>11_07_0002 - 27171791-27172222
Length = 143
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 380 GVRGVSGPGSAPQGDDSRPIQSVGG 306
G R +G GSA GDD I S GG
Sbjct: 95 GGRSFAGGGSADDGDDGTGISSSGG 119
>11_01_0646 - 5219358-5219377,5219718-5220459,5220749-5221072
Length = 361
Score = 27.5 bits (58), Expect = 6.6
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 402 SCFVPGRGSKRRVWSRF 352
SC V GRG +R+W+ F
Sbjct: 7 SCIVRGRGKNKRIWTYF 23
>09_02_0279 + 6702517-6702948
Length = 143
Score = 27.5 bits (58), Expect = 6.6
Identities = 13/25 (52%), Positives = 14/25 (56%)
Frame = -1
Query: 380 GVRGVSGPGSAPQGDDSRPIQSVGG 306
G R +G GSA GDD I S GG
Sbjct: 95 GGRSFAGGGSADDGDDGTGISSSGG 119
>05_01_0235 -
1768049-1769634,1770695-1770815,1770965-1771033,
1771199-1771323,1771613-1771712,1771806-1771910,
1772559-1772657,1772751-1772867
Length = 773
Score = 27.5 bits (58), Expect = 6.6
Identities = 17/57 (29%), Positives = 25/57 (43%)
Frame = -3
Query: 483 PDTXIINRLYTNLSEILVYDPAFGSRDSCFVPGRGSKRRVWSRFSSPRRRQSADPVG 313
P ++ LY L E + ++G D VP +R+W RF PR +A G
Sbjct: 546 PLLLLVPLLYPILPEESKWRASYGRED---VPSASDLKRMWVRFKKPRGGGAAAVTG 599
>03_02_0613 -
9848514-9848539,9848942-9849200,9849326-9849365,
9849952-9850117,9850228-9850756
Length = 339
Score = 27.5 bits (58), Expect = 6.6
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = +1
Query: 280 ASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPAPRN 393
AS GA+ R+ P + R S P A PGP P P+P +
Sbjct: 137 ASLGAKPRAQPPHLL-RPSPP--ATPGPHAPALPSPHH 171
>02_04_0512 + 23565210-23566058,23566824-23568224
Length = 749
Score = 27.5 bits (58), Expect = 6.6
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = +2
Query: 74 GRAGRCALVSTARLLHAALDEGGGAAASASHTRVTWG 184
G AG A V+ + LL + GGAAA+A +T + G
Sbjct: 75 GAAGHRAGVARSLLLECECSKNGGAAAAAENTLLRAG 111
>06_01_0850 -
6472213-6473541,6474229-6474282,6474616-6474671,
6474824-6476012
Length = 875
Score = 27.1 bits (57), Expect = 8.8
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +2
Query: 89 CALVSTARLLHAALDEGGGAAASASHTRVTWGA 187
C LVST+R L GGG AAS+S + T A
Sbjct: 456 CTLVSTSRSLRF---HGGGGAASSSSSTATAAA 485
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 253 ADTTRSMRRASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPAP 387
+ TT + +S+ R+PP R +PW + GP P P P
Sbjct: 37 SSTTAAASSSSSSGGNRAPPAPNPTR-GAPWLQKWGPTDPAAPPP 80
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,153,050
Number of Sequences: 37544
Number of extensions: 234989
Number of successful extensions: 1238
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1234
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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