Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O04
         (509 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006171-1|AAH06171.1|  211|Homo sapiens OBFC2B protein protein.       31   1.8  
BC001079-1|AAH01079.1|  211|Homo sapiens oligonucleotide/oligosa...    31   1.8  
AF218002-1|AAG17244.1|  554|Homo sapiens unknown protein.              30   5.4  

>BC006171-1|AAH06171.1|  211|Homo sapiens OBFC2B protein protein.
          Length = 211

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 256 DTTRSMRRASTGARRRSPPTD-WIGR-LSSPWGAEPGPDTPLTPAPRNKTRISRSE 417
           D+  S  + +TG    SP ++   G  LS+P G   GP  P TP+    TRI+RS+
Sbjct: 128 DSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQ 183


>BC001079-1|AAH01079.1|  211|Homo sapiens
           oligonucleotide/oligosaccharide-binding fold containing
           2B protein.
          Length = 211

 Score = 31.5 bits (68), Expect = 1.8
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
 Frame = +1

Query: 256 DTTRSMRRASTGARRRSPPTD-WIGR-LSSPWGAEPGPDTPLTPAPRNKTRISRSE 417
           D+  S  + +TG    SP ++   G  LS+P G   GP  P TP+    TRI+RS+
Sbjct: 128 DSNPSASQPTTGPSAASPASENQNGNGLSAPPGPGGGPHPPHTPSHPPSTRITRSQ 183


>AF218002-1|AAG17244.1|  554|Homo sapiens unknown protein.
          Length = 554

 Score = 29.9 bits (64), Expect = 5.4
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 304 SPPTDWIGRLSSPWGAEPGPDTPLTPAPRNKTRISRSECGII 429
           S P +W+    + WG E  P+T  TPA      + +  CG +
Sbjct: 460 STPGEWLLHQRTLWGQESEPNTRDTPALCRGRSLPQESCGAV 501


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,858,497
Number of Sequences: 237096
Number of extensions: 1158760
Number of successful extensions: 4549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4501
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4763295768
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)