Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O04
         (509 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical pr...    31   0.64 
Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical pr...    28   3.4  
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    28   3.4  
AF099917-2|AAC68785.1|  235|Caenorhabditis elegans Hypothetical ...    28   3.4  
Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical pr...    28   4.5  

>Z72514-1|CAA96674.1|  428|Caenorhabditis elegans Hypothetical
           protein T10B10.1 protein.
          Length = 428

 Score = 30.7 bits (66), Expect = 0.64
 Identities = 21/58 (36%), Positives = 23/58 (39%)
 Frame = -3

Query: 345 PRRRQSADPVGXXXXXXXXXXXXXXXXRGVRLAPRVTRAPRVTRAPHVTRVTRAPHVT 172
           P+R+    P                   G R AP  TRAP  TRAP  T  TRAP  T
Sbjct: 277 PQRQDDRTPPSSGTSAPQPPPRGSTAAPGTR-APPATRAPPATRAPPAT--TRAPPAT 331


>Z81468-2|CAN99666.1|  950|Caenorhabditis elegans Hypothetical
           protein C13B4.1b protein.
          Length = 950

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 65  GGVGRAGRCALVSTARLLHAALDEGGGAAASASHTRVTWGARVTRVTW 208
           GG+G  G    +STARLL    D G G  + +S+T +   A    + W
Sbjct: 718 GGLGYHGTNRYISTARLL---TDLGAGNESGSSNTLLILHAMFMTIAW 762


>Z81468-1|CAB03875.3| 1010|Caenorhabditis elegans Hypothetical
           protein C13B4.1a protein.
          Length = 1010

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +2

Query: 65  GGVGRAGRCALVSTARLLHAALDEGGGAAASASHTRVTWGARVTRVTW 208
           GG+G  G    +STARLL    D G G  + +S+T +   A    + W
Sbjct: 718 GGLGYHGTNRYISTARLL---TDLGAGNESGSSNTLLILHAMFMTIAW 762


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +1

Query: 253 ADTTRSMRRASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPAPRNKTRISRSEC 420
           A + R  R+AS G  +   PT    + S  +     P TP + A   + ++  S+C
Sbjct: 17  ASSIRETRQASCGCAQSVQPTCSCQQASQQYSCSCQPSTPCSCASSQQYQLQTSQC 72


>AF099917-2|AAC68785.1|  235|Caenorhabditis elegans Hypothetical
           protein F54D10.5 protein.
          Length = 235

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -1

Query: 359 PGSAPQGDDSRPIQSVGGLLRRAPVLALLI 270
           PGS+ Q +DS P   V  +LR  P+L +++
Sbjct: 7   PGSSHQNEDSSPDDDVEEILRNNPMLNVIL 36


>Z79756-9|CAK12562.1|  830|Caenorhabditis elegans Hypothetical
           protein F53C11.5c protein.
          Length = 830

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 271 MRRASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPAPRNKTRISR 411
           M R      RRS          SP+G  P    P  PAPRN+++  R
Sbjct: 645 MTREQQFTSRRSMTFHNTNEAQSPFGRGPSGILPSRPAPRNRSQEPR 691


>Z79756-8|CAB02122.1|  891|Caenorhabditis elegans Hypothetical
           protein F53C11.5b protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 271 MRRASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPAPRNKTRISR 411
           M R      RRS          SP+G  P    P  PAPRN+++  R
Sbjct: 706 MTREQQFTSRRSMTFHNTNEAQSPFGRGPSGILPSRPAPRNRSQEPR 752


>Z79756-7|CAK12561.1|  855|Caenorhabditis elegans Hypothetical
           protein F53C11.5a protein.
          Length = 855

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/47 (34%), Positives = 20/47 (42%)
 Frame = +1

Query: 271 MRRASTGARRRSPPTDWIGRLSSPWGAEPGPDTPLTPAPRNKTRISR 411
           M R      RRS          SP+G  P    P  PAPRN+++  R
Sbjct: 670 MTREQQFTSRRSMTFHNTNEAQSPFGRGPSGILPSRPAPRNRSQEPR 716


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,106,076
Number of Sequences: 27780
Number of extensions: 156470
Number of successful extensions: 651
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 988489374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)