Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_O03
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1 |Schizosacch... 155 4e-39
SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10 |Schizosac... 93 3e-20
SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy... 88 9e-19
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 81 1e-16
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 77 1e-15
SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3 |Schizosaccha... 74 1e-14
SPBC776.09 |ste13||ATP-dependent RNA helicase Ste13|Schizosaccha... 73 3e-14
SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomy... 73 3e-14
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc... 71 1e-13
SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomy... 71 1e-13
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 68 7e-13
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 65 5e-12
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 64 9e-12
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy... 64 2e-11
SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase Su... 63 3e-11
SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar... 61 1e-10
SPBP8B7.16c |dbp2||ATP-dependent RNA helicase Dbp2|Schizosacchar... 60 1e-10
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 60 2e-10
SPAC17G6.14c |uap56||ATP-dependent RNA helicase Uap56|Schizosacc... 59 3e-10
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 57 1e-09
SPCC63.11 |prp28||U5 snRNP-associated protein Prp28 |Schizosacch... 56 2e-09
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch... 53 2e-08
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 26 3.0
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo... 26 3.9
SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces p... 25 5.2
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p... 25 5.2
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 25 9.0
SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces po... 25 9.0
>SPAC30D11.03 |drs1||ATP-dependent RNA helicase Drs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 754
Score = 155 bits (376), Expect = 4e-39
Identities = 77/153 (50%), Positives = 101/153 (66%)
Frame = +2
Query: 62 NASFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPI 241
++SF MNLSRP+LK + L + PT IQ TIP+ALLGKD+ +++PI
Sbjct: 258 HSSFQSMNLSRPILKGLSNLGFEVPTQIQDKTIPLALLGKDIVGAAVTGSGKTAAFIVPI 317
Query: 242 LERLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESV 421
LERLLY+ K TRVLIL PTREL Q H+V +++ FT + V L +GGL +K QE
Sbjct: 318 LERLLYRPKKVP-TTRVLILCPTRELAMQCHSVATKIASFTDIMVCLCIGGLSLKLQEQE 376
Query: 422 LRRNPDIVIATPGRLIDHIRNTPSFGLHAIEVL 520
LR+ PDIVIATPGR IDH+RN+ F + IE++
Sbjct: 377 LRKRPDIVIATPGRFIDHMRNSQGFTVENIEIM 409
>SPAC31A2.07c |dbp10||ATP-dependent RNA helicase Dbp10
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 848
Score = 92.7 bits (220), Expect = 3e-20
Identities = 55/150 (36%), Positives = 82/150 (54%)
Frame = +2
Query: 65 ASFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPIL 244
++F M L++ LL+AI + PTPIQ TIP+ L G+DV +++P++
Sbjct: 69 SNFQSMGLNQTLLRAIFKKGFKAPTPIQRKTIPLLLEGRDVVGMARTGSGKTAAFVIPMI 128
Query: 245 ERLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVL 424
E L K+ + TR LIL P REL Q V + S+ T + VGG+ ++ Q S+L
Sbjct: 129 EHL--KSTLANSNTRALILSPNRELALQTVKVVKDFSKGTDLRSVAIVGGVSLEEQFSLL 186
Query: 425 RRNPDIVIATPGRLIDHIRNTPSFGLHAIE 514
PDIV+ATPGR + H++ L +IE
Sbjct: 187 SGKPDIVVATPGRFL-HLKVEMKLELSSIE 215
>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 87.8 bits (208), Expect = 9e-19
Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 1/143 (0%)
Frame = +2
Query: 71 FYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILER 250
F + LS + KAI + + T IQ +IP L G+DV +++P +E
Sbjct: 91 FSDLQLSENIQKAIKEMGFETMTEIQKRSIPPLLAGRDVLGAAKTGSGKTLAFLIPTIE- 149
Query: 251 LLYKAKGGDRV-TRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLR 427
+LY K R T V+I+ PTREL Q+ V ++L ++ T G+ +GG + + + L
Sbjct: 150 MLYALKFKPRNGTGVIIISPTRELALQIFGVAKELLKYHHQTFGIVIGGANRRAEADKLV 209
Query: 428 RNPDIVIATPGRLIDHIRNTPSF 496
+ ++++ATPGRL+DH++NT F
Sbjct: 210 KGVNLLVATPGRLLDHLQNTKGF 232
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 81.0 bits (191), Expect = 1e-16
Identities = 54/143 (37%), Positives = 74/143 (51%), Gaps = 6/143 (4%)
Frame = +2
Query: 68 SFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILE 247
+F NL L +AI + PT +Q+ TIP+AL GKD+ Y++PILE
Sbjct: 15 TFSDFNLDPRLQRAIHKCEFEKPTSVQSETIPLALEGKDLVAQARTGSGKTAAYLIPILE 74
Query: 248 RLLYKAKGGDRVTR---VLILVPTRELGAQVHTVTRQLSQFTTV---TVGLSVGGLDVKY 409
LL K K D R L+LVPTREL QV+ V +L+ F + + ++ D
Sbjct: 75 -LLLKQKQIDENQRGIFALLLVPTRELAQQVYNVLEKLTAFCSKHIRFINVATNSSDT-V 132
Query: 410 QESVLRRNPDIVIATPGRLIDHI 478
Q +L PDIVIATP R + H+
Sbjct: 133 QRPLLLDLPDIVIATPSRCVVHV 155
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 77.4 bits (182), Expect = 1e-15
Identities = 46/151 (30%), Positives = 70/151 (46%)
Frame = +2
Query: 68 SFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILE 247
+F + + L +A L + PTPIQ IPV L +DV + LP+++
Sbjct: 47 TFKELGVIDELCEACEKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQ 106
Query: 248 RLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLR 427
L V +L PTREL Q+ + V + VGG+D+ Q L
Sbjct: 107 ELWNNPSPFFAV----VLAPTRELAYQISEQFEAIGGSIGVRSVVIVGGMDMVTQAVALS 162
Query: 428 RNPDIVIATPGRLIDHIRNTPSFGLHAIEVL 520
+ P +++ TPGRL+DH+ NT F L ++ L
Sbjct: 163 KKPHVLVCTPGRLMDHLENTKGFSLKNLKYL 193
>SPBC17D1.06 |dbp3||ATP-dependent RNA helicase Dbp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 578
Score = 73.7 bits (173), Expect = 1e-14
Identities = 44/124 (35%), Positives = 61/124 (49%)
Frame = +2
Query: 113 GALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAKGGDRVTRV 292
G NY PTPIQAAT P L G+DV + +P L+ L V RV
Sbjct: 181 GLKNYKEPTPIQAATWPYLLAGRDVVGIAETGSGKTVAFGIPALQ-YLNGLSDNKSVPRV 239
Query: 293 LILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLRRNPDIVIATPGRLID 472
L++ PTREL Q + L Q T + + GG K +++ +N ++I TPGRL+D
Sbjct: 240 LVVSPTRELAIQTYENLNSLIQGTNLKAVVVYGGAP-KSEQARAAKNASVIIGTPGRLLD 298
Query: 473 HIRN 484
I +
Sbjct: 299 LIND 302
>SPBC776.09 |ste13||ATP-dependent RNA helicase
Ste13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 485
Score = 72.9 bits (171), Expect = 3e-14
Identities = 43/129 (33%), Positives = 64/129 (49%)
Frame = +2
Query: 86 LSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILERLLYKA 265
L R LL I + P+PIQ +IP+AL G+D+ +++P LE++ K
Sbjct: 51 LKRELLMGIFEAGFERPSPIQEESIPIALSGRDILARAKNGTGKTAAFVIPSLEKVDTKK 110
Query: 266 KGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLRRNPDIV 445
+ LILVPTREL Q V + L + V V ++ GG ++ L IV
Sbjct: 111 SK----IQTLILVPTRELALQTSQVCKTLGKHMNVKVMVTTGGTTLRDDIIRLNDTVHIV 166
Query: 446 IATPGRLID 472
+ TPGR++D
Sbjct: 167 VGTPGRVLD 175
>SPAC1093.05 |||ATP-dependent RNA helicase Hca4 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 735
Score = 72.5 bits (170), Expect = 3e-14
Identities = 41/150 (27%), Positives = 74/150 (49%)
Frame = +2
Query: 71 FYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILER 250
F + L++P A+ +++ T IQ IP AL G+D+ +++P++E
Sbjct: 41 FAELPLTQPTKSALKNAHFITLTEIQKQCIPSALKGRDILGAAKTGSGKTLAFIVPLIEN 100
Query: 251 LLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLRR 430
L K L++ PTREL Q ++ + + + GL +GG + K ++ L R
Sbjct: 101 LYRKKWTSLDGLGALVISPTRELAIQTFETLVKIGRLHSFSAGLIIGGNNYKEEKERLSR 160
Query: 431 NPDIVIATPGRLIDHIRNTPSFGLHAIEVL 520
+I++ TPGRL+ HI +F +++L
Sbjct: 161 -MNILVCTPGRLLQHIDQAVNFDTSGLQML 189
>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
Prp11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1014
Score = 70.5 bits (165), Expect = 1e-13
Identities = 41/137 (29%), Positives = 64/137 (46%), Gaps = 2/137 (1%)
Frame = +2
Query: 68 SFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILE 247
S+ LS + I +L Y PT IQA IP G+DV ++LP+
Sbjct: 419 SWSQCGLSAQTISVINSLGYEKPTSIQAQAIPAITSGRDVIGVAKTGSGKTIAFLLPMFR 478
Query: 248 RLLYKA--KGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESV 421
+ + K G+ + I+ PTREL Q+ + + + + GG +K Q +
Sbjct: 479 HIKDQRPLKTGEGPIAI-IMTPTRELAVQIFRECKPFLKLLNIRACCAYGGAPIKDQIAD 537
Query: 422 LRRNPDIVIATPGRLID 472
L+R +IV+ TPGR+ID
Sbjct: 538 LKRGAEIVVCTPGRMID 554
>SPBC4F6.07c |||ATP-dependent RNA helicase Mak5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 648
Score = 70.5 bits (165), Expect = 1e-13
Identities = 39/128 (30%), Positives = 63/128 (49%)
Frame = +2
Query: 83 NLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILERLLYK 262
+LS +L ++ + P PIQ+ IP A +G D+ + +PILE L
Sbjct: 128 SLSPEMLGSLSKAGFSKPMPIQSLVIPEASIGFDIIGKADTGSGKTLAFGIPILEHCLRN 187
Query: 263 AKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLRRNPDI 442
+ + L++ PTREL Q+ + + V GGL V+ Q+ +L ++P +
Sbjct: 188 VDA--KYVQALVVAPTRELAHQICQHFELIKPSPNIRVMSITGGLAVQKQQRLLNKHPHV 245
Query: 443 VIATPGRL 466
V+ATPGRL
Sbjct: 246 VVATPGRL 253
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 68.1 bits (159), Expect = 7e-13
Identities = 46/139 (33%), Positives = 63/139 (45%)
Frame = +2
Query: 68 SFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILE 247
SF + +S L+ + AL PT IQ I L G++ + LPI+E
Sbjct: 8 SFSDLGISPWLIDTLKALAIYEPTDIQEGVIAQILEGRNCIGGAKTGSGKTAAFALPIIE 67
Query: 248 RLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLR 427
+ G LIL PTREL Q+ L + L VGG+D+ Q L
Sbjct: 68 KWSKDPSG----IFALILTPTRELAIQIDEQFAALGANLNLKHALIVGGMDMIRQSIDLS 123
Query: 428 RNPDIVIATPGRLIDHIRN 484
+ P +V+ATPGRL D IR+
Sbjct: 124 KRPHVVVATPGRLADLIRS 142
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 65.3 bits (152), Expect = 5e-12
Identities = 44/139 (31%), Positives = 59/139 (42%)
Frame = +2
Query: 65 ASFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPIL 244
+SF MNL LL+ I A Y P+ +Q+ I G+DV + + IL
Sbjct: 21 SSFEEMNLKEDLLRGIYAYGYETPSAVQSRAIIQICKGRDVIAQAQSGTGKTATFSIGIL 80
Query: 245 ERLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVL 424
+ + R T+ LIL PTREL Q+ V L V +GG V L
Sbjct: 81 QSIDLSV----RDTQALILSPTRELAVQIQNVVLALGDHMNVQCHACIGGTSVGNDIKKL 136
Query: 425 RRNPDIVIATPGRLIDHIR 481
+V TPGR+ D IR
Sbjct: 137 DYGQHVVSGTPGRVTDMIR 155
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 64.5 bits (150), Expect = 9e-12
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 10/152 (6%)
Frame = +2
Query: 68 SFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILE 247
SF +N+ + L A+ A + TP+QA IP+ L KD+ Y+LP +
Sbjct: 2 SFQSINIDKWLKNAVAAQGFKKMTPVQANAIPLFLKNKDLVVEAVTGSGKTLAYLLPCFD 61
Query: 248 RLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQF--------TTVTVGLSVGGLDV 403
++ + + LI+ PTREL Q+ VT++L + + + +GG
Sbjct: 62 KVT-RRDTDETGLGALIVAPTRELATQIFNVTKELLAYQPDSLDGGKKLVADMYIGGKGT 120
Query: 404 KYQE--SVLRRNPDIVIATPGRLIDHIRNTPS 493
+ S +NP +VI TPGRL + + + S
Sbjct: 121 LTNDLASFREKNPSVVIGTPGRLNEMLSHISS 152
>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 709
Score = 63.7 bits (148), Expect = 2e-11
Identities = 43/139 (30%), Positives = 69/139 (49%), Gaps = 8/139 (5%)
Frame = +2
Query: 119 LNYVHPTPIQAATIPVALL--GKDVXXXXXXXXXXXXXYMLPILERLLYKAKGGDRVTR- 289
+N PT IQ+ +P L KD Y+LPI++RL+ K T
Sbjct: 157 MNISAPTAIQSCCLPALLNTDDKDAFIEAQTGSGKTLAYLLPIVQRLIRLPKNLHTRTSG 216
Query: 290 --VLILVPTRELGAQVHTVTRQLSQ--FTTVTVGLSV-GGLDVKYQESVLRRNPDIVIAT 454
+I+ PTREL Q++ V +L+ + V +V GG K +++ +R+ +I+I T
Sbjct: 217 IYAVIMAPTRELCQQIYNVANKLNNNPLSHWIVSCNVIGGEKKKSEKARIRKGVNILIGT 276
Query: 455 PGRLIDHIRNTPSFGLHAI 511
PGRL DH+ NT + + +
Sbjct: 277 PGRLADHLENTEALDVSQV 295
>SPCC1795.11 |sum3|ded1, slh3, moc2|ATP-dependent RNA helicase
Sum3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 62.9 bits (146), Expect = 3e-11
Identities = 43/145 (29%), Positives = 64/145 (44%), Gaps = 14/145 (9%)
Frame = +2
Query: 86 LSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILERLLYKA 265
L+ LL+ I Y PTP+Q +IP+ G+D+ ++ PIL K
Sbjct: 176 LNSHLLQNIKLSGYTQPTPVQKNSIPIVTSGRDLMACAQTGSGKTAGFLFPILSLAFDKG 235
Query: 266 KGGDRVTR--------------VLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDV 403
V + LIL PTREL Q+H +R+ + V GG D+
Sbjct: 236 PAAVPVDQDAGMGYRPRKAYPTTLILAPTRELVCQIHEESRKFCYRSWVRPCAVYGGADI 295
Query: 404 KYQESVLRRNPDIVIATPGRLIDHI 478
+ Q + + D++ ATPGRL+D I
Sbjct: 296 RAQIRQIDQGCDLLSATPGRLVDLI 320
>SPAC1006.07 |||translation initiation factor
eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 392
Score = 60.9 bits (141), Expect = 1e-10
Identities = 43/144 (29%), Positives = 64/144 (44%), Gaps = 1/144 (0%)
Frame = +2
Query: 53 YDENA-SFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXY 229
YDE +F MNL LL+ I A + P+ IQ I L +DV +
Sbjct: 14 YDEVIDTFDDMNLKPELLRGIYAYGFERPSAIQQRAIMPILGERDVLAQAQSGTGKTATF 73
Query: 230 MLPILERLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKY 409
+ +L+++ K + LIL PTREL Q+ V L V +GG V+
Sbjct: 74 SISVLQKIDTSLKQ----CQALILAPTRELAQQIQKVVVALGDLMNVECHACIGGTLVRD 129
Query: 410 QESVLRRNPDIVIATPGRLIDHIR 481
+ L+ +V+ TPGR+ D I+
Sbjct: 130 DMAALQAGVHVVVGTPGRVHDMIQ 153
>SPBP8B7.16c |dbp2||ATP-dependent RNA helicase
Dbp2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 60.5 bits (140), Expect = 1e-10
Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 2/127 (1%)
Frame = +2
Query: 98 LLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILERLLYKA--KG 271
+LK + L + PTPIQ P+A+ G+D+ Y LP + + +
Sbjct: 133 VLKEVKQLGFEAPTPIQQQAWPMAMSGRDMVGISATGSGKTLSYCLPAIVHINAQPLLSP 192
Query: 272 GDRVTRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLRRNPDIVIA 451
GD VL+L PTREL Q+ + + + + GG+ Q L R +I IA
Sbjct: 193 GDGPI-VLVLAPTRELAVQIQQECTKFGKSSRIRNTCVYGGVPRGPQIRDLIRGVEICIA 251
Query: 452 TPGRLID 472
TPGRL+D
Sbjct: 252 TPGRLLD 258
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 60.1 bits (139), Expect = 2e-10
Identities = 48/177 (27%), Positives = 80/177 (45%), Gaps = 17/177 (9%)
Frame = +2
Query: 41 EPPPYDENAS--FYMMNLSRPLLKAIGALNYVHPTPIQAATIPVAL----------LGKD 184
EP D N + F +N+S L++ + N +QAA +P+ L G D
Sbjct: 116 EPITVDPNTTVEFSSLNISSKLVERLQKQNITRGFAVQAAVLPLLLQDGRHGPMYSYGGD 175
Query: 185 VXXXXXXXXXXXXXYMLPILERLLYKAKGGDRVTRVLILVPTRELGAQVHTVTRQLSQFT 364
V Y++PI++ L ++ R+ R +++VPTREL QV
Sbjct: 176 VCVSAATGSGKTLSYVIPIVQCLSHRTV--PRL-RCVVIVPTRELTVQVAKTFEYYMSGA 232
Query: 365 TVTVGLSVGGLDVKYQESVLRRNP-----DIVIATPGRLIDHIRNTPSFGLHAIEVL 520
+ V G ++++ L + D++++TPGRL+DHIRN SF L + +
Sbjct: 233 GLQVCAWTGQKSLRHETYQLNGDENECRIDVLVSTPGRLVDHIRNDESFSLQHLRYM 289
>SPAC17G6.14c |uap56||ATP-dependent RNA helicase
Uap56|Schizosaccharomyces pombe|chr 1|||Manual
Length = 434
Score = 59.3 bits (137), Expect = 3e-10
Identities = 39/131 (29%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Frame = +2
Query: 86 LSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILERLLYKA 265
L LL+AI + HP+ +Q IP ++LG DV ++L L+++
Sbjct: 58 LKPELLRAITDSGFEHPSEVQQVCIPQSILGTDVLCQAKSGMGKTAVFVLSTLQQI---- 113
Query: 266 KGGDRVTRVLILVPTRELGAQVHTVTRQLSQF-TTVTVGLSVGGLDVKYQESVLR---RN 433
+ D VL+L TREL Q+ + S++ V + GG+++K + ++
Sbjct: 114 EPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFYGGINIKQDMEAFKDKSKS 173
Query: 434 PDIVIATPGRL 466
P IV+ATPGRL
Sbjct: 174 PHIVVATPGRL 184
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 57.2 bits (132), Expect = 1e-09
Identities = 28/65 (43%), Positives = 43/65 (66%), Gaps = 1/65 (1%)
Frame = +2
Query: 293 LILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLRR-NPDIVIATPGRLI 469
+IL PTREL Q+ R+L+ T + V ++GG +E+ +RR N +++IATPGRL
Sbjct: 116 VILSPTRELALQIFEEARKLTYGTGIRVSYAIGGNSKMREENAIRRGNANLLIATPGRLE 175
Query: 470 DHIRN 484
DH++N
Sbjct: 176 DHLQN 180
>SPCC63.11 |prp28||U5 snRNP-associated protein Prp28
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 56.4 bits (130), Expect = 2e-09
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 4/133 (3%)
Frame = +2
Query: 86 LSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPI---LERLL 256
L +LK + +NY P+ IQ A IPV L KD+ +++P+ + +L
Sbjct: 256 LPSEMLKVLKKVNYKEPSSIQRAAIPVLLQRKDLIGIAETGSGKTAAFIIPLIIAISKLP 315
Query: 257 YKAKGGDRV-TRVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVKYQESVLRRN 433
+ + ++L PTREL Q+ + ++ VGG + Q + +
Sbjct: 316 PLTESNMHLGPYAVVLAPTRELAQQIQVEGNKFAEPLGFRCVSVVGGHAFEEQSFQMSQG 375
Query: 434 PDIVIATPGRLID 472
IV+ATPGRL+D
Sbjct: 376 AHIVVATPGRLLD 388
>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 481
Score = 53.2 bits (122), Expect = 2e-08
Identities = 38/126 (30%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Frame = +2
Query: 122 NYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILERLLYKAKGGDRVTRVLIL 301
N T IQ IP +D+ Y+ PIL++L GG R +I+
Sbjct: 65 NITECTTIQRYAIPTIGSKRDLLACAPTGSGKTIAYLFPILQKLQLHVPGG---YRAIIV 121
Query: 302 VPTRELGAQVHTVTRQLSQFTTV-TVGLSVGGLDVKYQESVLRRNPDIVIATPGRLIDHI 478
PTREL Q++ +LS T++ + LS ++ + LR D+ I TP RL+ I
Sbjct: 122 APTRELCEQIYRQAEKLSFGTSLKIIELSKSNEKIQEKAPKLREKYDMCIGTPMRLVQAI 181
Query: 479 RNTPSF 496
+ SF
Sbjct: 182 QTGLSF 187
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 26.2 bits (55), Expect = 3.0
Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -1
Query: 281 RGPRPSLYTTIALELVTYTPQFCPY-P*QRTRIR 183
R PRP T A+ L TPQ P+ P TR+R
Sbjct: 1187 RPPRPFNLTPFAISLNALTPQLKPWLPPTDTRLR 1220
>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
Agn2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 25.8 bits (54), Expect = 3.9
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = -2
Query: 346 SRNCMYLSPEFPRRYQYENPSDAVPALRFIQQS 248
S+N S PR Y+N SD + + F + S
Sbjct: 322 SKNATASSDSIPRPDNYQNSSDVISVISFAKSS 354
>SPAC16E8.16 |||transcription factor TFIIB |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 174 KSATGIVAACIGVGCT*FKAPIAF 103
KS+ I+AACI + C K P F
Sbjct: 158 KSSQSIIAACIYIACRQGKVPRTF 181
>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
protein 1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 567
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +2
Query: 50 PYDENASFYMMNLSRPLLKAIGALNYVHPTPIQAATIP 163
PY +N M +L++P L + Y+ P P +AT+P
Sbjct: 187 PYVQNVYPQMPSLNQPGLHIVNQPTYLAPVP--SATVP 222
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 24.6 bits (51), Expect = 9.0
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 95 PLLKAIGALNYVHPTP 142
PL +AIG+ +++HP P
Sbjct: 127 PLRRAIGSYDFLHPRP 142
>SPAC9E9.11 |plr1|plr|pyridoxal reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 24.6 bits (51), Expect = 9.0
Identities = 19/44 (43%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 374 VGLSV-GGLDVKYQESVLRRNPDIVIATPGRLIDHIRNTPSFGL 502
V LSV GGLD K V NPD V + +I H+R T L
Sbjct: 78 VFLSVKGGLDFK--TLVPDGNPDFVSKSVENVIAHLRGTKKLDL 119
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,143,674
Number of Sequences: 5004
Number of extensions: 42789
Number of successful extensions: 149
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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