Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O03
         (521 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       61   6e-12
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    25   0.62 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    25   0.62 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   1.4  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    21   5.8  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 61.3 bits (142), Expect = 6e-12
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 7/144 (4%)
 Frame = +2

Query: 68  SFYMMNLSRPLLKAIGALNYVHPTPIQAATIPVALLGKDVXXXXXXXXXXXXXYMLPILE 247
           SF    L   +L  I    Y  PTP+Q   +P+ + G+D+             + +PI+ 
Sbjct: 197 SFEAAGLRNIVLDNIKKSGYKKPTPVQKHALPIIMNGRDLMACAQTGSGKTAAFAVPIIN 256

Query: 248 RLLYKAKGGDRVT-------RVLILVPTRELGAQVHTVTRQLSQFTTVTVGLSVGGLDVK 406
            LL ++   D V        +V+I+ PTREL  Q+     + S  + +   ++ GG  V 
Sbjct: 257 TLLERSV--DLVVTSTYCEPQVVIVSPTRELTIQIWQQIVKFSLNSILKTVVAYGGTSVM 314

Query: 407 YQESVLRRNPDIVIATPGRLIDHI 478
           +Q   L     I++ATPGRL+D +
Sbjct: 315 HQRGKLSAGCHILVATPGRLLDFV 338


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 349 LSRNCMYLSPEFPRRYQYENPSDAVP 272
           +S +C+YL+   P++Y+  +  D  P
Sbjct: 122 ISEDCLYLNIWVPQKYRLRHKGDGSP 147


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 24.6 bits (51), Expect = 0.62
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -2

Query: 349 LSRNCMYLSPEFPRRYQYENPSDAVP 272
           +S +C+YL+   P++Y+  +  D  P
Sbjct: 122 ISEDCLYLNIWVPQKYRLRHKGDGSP 147


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2

Query: 413 ESVLRRNPDIVIATPGRLIDHIRNT 487
           E+++RRN    +  P  +I H R T
Sbjct: 114 ETIIRRNSRYPLRPPQEVISHYRRT 138


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 21.4 bits (43), Expect = 5.8
 Identities = 9/26 (34%), Positives = 13/26 (50%)
 Frame = +1

Query: 67  FVLHDELVSSTVESYRCFELCTSDAN 144
           F L +E    TV+  +   +CT D N
Sbjct: 65  FKLGEEFEEETVDGRKVKSVCTLDGN 90


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,990
Number of Sequences: 438
Number of extensions: 2938
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14600229
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)