Samia BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O02
         (299 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q39G28 Cluster: Putative uncharacterized protein; n=1; ...    32   2.2  
UniRef50_Q8IB94 Cluster: Ubiquitin-protein ligase 1, putative; n...    31   3.8  
UniRef50_Q7RKK0 Cluster: Homeobox-containing protein; n=5; Plasm...    31   3.8  
UniRef50_Q8IKV0 Cluster: Putative uncharacterized protein; n=6; ...    31   6.7  
UniRef50_Q1GQY1 Cluster: AFG1-like ATPase; n=7; Sphingomonadales...    30   8.9  
UniRef50_Q23F16 Cluster: Putative uncharacterized protein; n=1; ...    30   8.9  

>UniRef50_Q39G28 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia sp. 383|Rep: Putative uncharacterized
           protein - Burkholderia sp. (strain 383) (Burkholderia
           cepacia (strain ATCC 17760/ NCIB 9086 / R18194))
          Length = 311

 Score = 32.3 bits (70), Expect = 2.2
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = -3

Query: 276 RNRLFRPSDCCQSNLNNHHFLPFPLFVENMNSALGYKHC 160
           R R FR   CC +  N       P FVE +    G+K C
Sbjct: 8   RIRSFRVQVCCDAGCNEQEIDRVPFFVERIEKNAGFKFC 46


>UniRef50_Q8IB94 Cluster: Ubiquitin-protein ligase 1, putative; n=10;
            cellular organisms|Rep: Ubiquitin-protein ligase 1,
            putative - Plasmodium falciparum (isolate 3D7)
          Length = 8591

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 219  NDDYLDSIDNNHLDGTNGSLNMTDNS 296
            NDDY+D +DNN+ +  N + N  +N+
Sbjct: 5372 NDDYVDEVDNNNNNNNNNNNNNNNNN 5397


>UniRef50_Q7RKK0 Cluster: Homeobox-containing protein; n=5;
           Plasmodium|Rep: Homeobox-containing protein - Plasmodium
           yoelii yoelii
          Length = 734

 Score = 31.5 bits (68), Expect = 3.8
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +3

Query: 165 VYNQVPNSCFRQIVEMA---ENDDYLDSIDNNHLDGTNGSL 278
           +Y    N CF   V+ +   EN+D  +S DNN+   TNG++
Sbjct: 297 IYEDNKNKCFETNVKKSYTNENEDIQNSGDNNNYSSTNGNI 337


>UniRef50_Q8IKV0 Cluster: Putative uncharacterized protein; n=6;
           Plasmodium|Rep: Putative uncharacterized protein -
           Plasmodium falciparum (isolate 3D7)
          Length = 3347

 Score = 30.7 bits (66), Expect = 6.7
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +3

Query: 159 CSVYNQVPNSCFRQIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNS 296
           C  +N++ N+    I     N+D  ++ DNN+ D  NG  N  DN+
Sbjct: 386 CEEWNKINNTKNEDINNDDNNNDDNNNEDNNNEDNNNGDNNNGDNN 431


>UniRef50_Q1GQY1 Cluster: AFG1-like ATPase; n=7;
           Sphingomonadales|Rep: AFG1-like ATPase - Sphingopyxis
           alaskensis (Sphingomonas alaskensis)
          Length = 379

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 258 PSDCCQSNLNNHHFLPFPLFVENMNSALGYKHCTNIR 148
           P D  +  LN  HFLPF   VE     +G    T+ R
Sbjct: 167 PKDLYKDGLNREHFLPFIALVEERLEVMGLNGPTDYR 203


>UniRef50_Q23F16 Cluster: Putative uncharacterized protein; n=1;
           Tetrahymena thermophila SB210|Rep: Putative
           uncharacterized protein - Tetrahymena thermophila SB210
          Length = 652

 Score = 30.3 bits (65), Expect = 8.9
 Identities = 14/36 (38%), Positives = 23/36 (63%), Gaps = 4/36 (11%)
 Frame = +3

Query: 171 NQVPNSC---FRQIVEMAENDDYLD-SIDNNHLDGT 266
           NQ+PNSC     +++   +N   LD +I+NN+ DG+
Sbjct: 559 NQIPNSCLIDLSRVISQMKNISTLDLTIENNYFDGS 594


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,462,139
Number of Sequences: 1657284
Number of extensions: 4741126
Number of successful extensions: 11526
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11491
length of database: 575,637,011
effective HSP length: 76
effective length of database: 449,683,427
effective search space used: 10342718821
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)