Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O02
         (299 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    28   0.34 
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   0.78 
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|...    25   1.8  
SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|c...    25   2.4  
SPAC1687.13c |csn5||COP9/signalosome complex subunit Csn5|Schizo...    25   3.1  
SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subu...    24   5.5  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    24   5.5  
SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyc...    23   7.3  
SPBC646.13 |sds23|psp1, moc1|inducer of sexual development Sds23...    23   7.3  
SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr ...    23   7.3  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    23   9.6  
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||...    23   9.6  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    23   9.6  
SPBC23E6.05 |arx1||ribosomal export complex Arx1 |Schizosaccharo...    23   9.6  

>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.9 bits (59), Expect = 0.34
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +2

Query: 101  NLFFKLGHWHHNGFGYRMLVQCL*PSAEFMFSTNSGN 211
            NL +  G W+  GFGY +L Q   P  EF+  T   N
Sbjct: 1582 NLAWWSGRWNGQGFGYMVLTQ---PWREFVCKTTELN 1615


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 0.78
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -3

Query: 243 QSNLNNHHFLPFPLFVENMNSALGYK 166
           QSN  N+ FLPF   VEN+   + +K
Sbjct: 6   QSNSKNYVFLPFSKRVENLKIDVAHK 31


>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1064

 Score = 25.4 bits (53), Expect = 1.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 270 RLFRPSDCCQSNLNNHHFLPFPLFVENMN 184
           R + P D  + +L + HFLPFP +   ++
Sbjct: 781 RNYMPIDKNEISLRSVHFLPFPTYKSELD 809


>SPAC2C4.09 |||DUF1640 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 216

 Score = 25.0 bits (52), Expect = 2.4
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +3

Query: 96  FETYFLSWVIGIITG 140
           F+T  L WV GI+TG
Sbjct: 189 FKTQTLQWVFGIVTG 203


>SPAC1687.13c |csn5||COP9/signalosome complex subunit
           Csn5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 299

 Score = 24.6 bits (51), Expect = 3.1
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 149 GNQTRYDANDPT*KISFKLNT*TKSVFIYSNVL 51
           G +TR +A++   + S + +T  KSV+ + NV+
Sbjct: 82  GTETRVNAHEEAQEYSVQYHTLCKSVYRHENVI 114


>SPAPB1E7.03 |rpc82||DNA-directed RNA polymerase III complex subunit
           Rpc82 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 591

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 8/18 (44%), Positives = 14/18 (77%)
 Frame = +3

Query: 198 QIVEMAENDDYLDSIDNN 251
           ++ E+AE D+Y +S+D N
Sbjct: 361 ELDELAEEDNYEESVDEN 378


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 23.8 bits (49), Expect = 5.5
 Identities = 9/31 (29%), Positives = 20/31 (64%)
 Frame = +3

Query: 195 RQIVEMAENDDYLDSIDNNHLDGTNGSLNMT 287
           R  +E+ E+D     ++N++ + TNG+ N++
Sbjct: 741 RDDIEVEEDDAEAQELENDNTNTTNGNDNVS 771


>SPAC637.06 |||alpha-1,2-galactosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 347

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -3

Query: 255 SDCCQSNLNNHHFLPFPLFVENMNSALG 172
           +D  + N  N H +PF  + E++N  LG
Sbjct: 188 TDSMEFNPKNFHEIPFVDYSEDINFILG 215


>SPBC646.13 |sds23|psp1, moc1|inducer of sexual development
           Sds23/Moc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 408

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 14/44 (31%), Positives = 18/44 (40%)
 Frame = -3

Query: 282 CSRNRLFRPSDCCQSNLNNHHFLPFPLFVENMNSALGYKHCTNI 151
           C R  L +   C  S  NN H  P  +    +N  LG    T+I
Sbjct: 319 CHRLWLVQSPSCPPSPKNNAHLSPGSMGGVKVNQLLGVVSLTDI 362


>SPBPB8B6.02c |||urea transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 673

 Score = 23.4 bits (48), Expect = 7.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 75  CIYIF*CTSINVVI 34
           C+Y+F C S NV++
Sbjct: 131 CVYLFYCISTNVLV 144


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = +3

Query: 102 TYFLSWVIGIITGLVT 149
           T+F+S +IG+  GL+T
Sbjct: 236 TFFISLLIGVSIGLIT 251


>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 525

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
 Frame = +1

Query: 142 WLPNVSAVFITKCRI--HVFDK*WKWQK 219
           WLP +SAV+   C I  ++  K  KW K
Sbjct: 164 WLPKLSAVYGRYCVIQENIGKKVEKWMK 191


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 179 HLVINTALTFGNQTRYDANDP 117
           H  +N+  + GN    DANDP
Sbjct: 664 HSSVNSINSHGNPRTVDANDP 684


>SPBC23E6.05 |arx1||ribosomal export complex Arx1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 417

 Score = 23.0 bits (47), Expect = 9.6
 Identities = 8/32 (25%), Positives = 17/32 (53%)
 Frame = -3

Query: 231 NNHHFLPFPLFVENMNSALGYKHCTNIR*PNP 136
           + H  +P P+ + + ++ +  +  T I  PNP
Sbjct: 340 DRHILVPMPVLISSPSNVIAREELTVITQPNP 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,182,563
Number of Sequences: 5004
Number of extensions: 21591
Number of successful extensions: 54
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 73700136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)