Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O02
         (299 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0967 + 29265465-29266214,29267718-29267944,29268428-292685...    27   3.6  
01_06_1060 + 34162161-34162554,34162613-34162675,34163262-341635...    27   3.6  
12_02_0957 + 24807261-24807311,24807436-24807773,24808727-248089...    26   6.3  
11_06_0435 - 23519908-23520054,23520398-23520514,23521152-235212...    25   8.3  

>03_05_0967 +
           29265465-29266214,29267718-29267944,29268428-29268557,
           29268651-29268719,29268803-29268946,29269775-29270011,
           29270897-29270998,29271131-29271396,29271766-29273410,
           29274449-29275018
          Length = 1379

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +3

Query: 213 AENDDYLDSIDNNHLDGTNGSLNMTDNS 296
           A  D+  D +  +H DG +GSL + D++
Sbjct: 693 AAADEAADKLSADHFDGNDGSLALVDSA 720


>01_06_1060 +
           34162161-34162554,34162613-34162675,34163262-34163531,
           34163944-34164623
          Length = 468

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)
 Frame = -3

Query: 297 DCCQSCSRNRLFRPSDCCQSNLNNHHF 217
           DC Q C R     P  CC+S    H F
Sbjct: 128 DCLQGCRRLLEVHPLTCCESRNMMHGF 154


>12_02_0957 +
           24807261-24807311,24807436-24807773,24808727-24808927,
           24809024-24809069,24809284-24809600,24809949-24810072,
           24810465-24810537,24810968-24811173,24811384-24811651,
           24811780-24811877,24812116-24812379
          Length = 661

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 288 QSCSRNRLFRPSDCCQSNLNNHHFL 214
           QS  R R+ +PS  C   + NH++L
Sbjct: 312 QSPRRERMNKPSTTCMDCITNHYWL 336


>11_06_0435 -
           23519908-23520054,23520398-23520514,23521152-23521263,
           23521491-23521540,23522001-23522129,23522289-23522375,
           23523635-23523679,23523817-23523887,23523925-23524005,
           23524547-23524602,23526489-23526595
          Length = 333

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 114 LKNKFQIKHLNKICIYIF*CTSI 46
           ++N FQ ++L+K C+ +F C S+
Sbjct: 211 IENLFQNEYLSKACLPLFVCISL 233


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,051,316
Number of Sequences: 37544
Number of extensions: 121802
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 14,793,348
effective HSP length: 71
effective length of database: 12,127,724
effective search space used: 339576272
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)