Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_O02
         (299 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical pr...    29   0.62 
AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b prote...    29   0.82 
AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical...    26   4.4  
Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical pr...    25   7.6  
AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical...    25   7.6  

>Z78543-4|CAB01754.1| 1785|Caenorhabditis elegans Hypothetical protein
            F29G6.3b protein.
          Length = 1785

 Score = 29.1 bits (62), Expect = 0.62
 Identities = 11/36 (30%), Positives = 25/36 (69%)
 Frame = -3

Query: 270  RLFRPSDCCQSNLNNHHFLPFPLFVENMNSALGYKH 163
            ++ +PSD   S+ + HH++P P+F +++ + + Y+H
Sbjct: 1558 QIAKPSDVKLSDYDKHHYVP-PVFEKSVVNQVEYEH 1592


>AF040653-5|AAB95026.1|  491|Caenorhabditis elegans F-box b protein
           protein 52 protein.
          Length = 491

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 14/35 (40%), Positives = 23/35 (65%)
 Frame = +3

Query: 192 FRQIVEMAENDDYLDSIDNNHLDGTNGSLNMTDNS 296
           FRQI++M  ++ YL ++  N+L  T  S+  T+NS
Sbjct: 189 FRQILQMEHHNLYLSNLSLNNLLITRSSVIETENS 223


>AF067216-10|AAC17519.1|  492|Caenorhabditis elegans Hypothetical
           protein C35E7.3 protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = +3

Query: 150 EC*CSVYNQVPNSCFRQIVEMAENDDYLDSIDNNHL 257
           +C C  Y +    C  + +++ END+ +D    N L
Sbjct: 94  QCTCCEYKKELVGCHLKTIKLPENDELVDEDSGNFL 129


>Z67734-3|CAA91529.2| 1050|Caenorhabditis elegans Hypothetical
           protein B0198.3 protein.
          Length = 1050

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
 Frame = -3

Query: 252 DCCQSNLNNHHF----LPFPLFVENMNSALGYKHCTNI 151
           DC Q      HF    + F  F E ++SAL + HC  I
Sbjct: 859 DCHQDTDPAQHFGRVSIRFSQFAEQISSALEHLHCAGI 896


>AL117204-16|CAB55130.1|  389|Caenorhabditis elegans Hypothetical
           protein Y116A8C.25 protein.
          Length = 389

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +2

Query: 86  KCLI*NLFFKLGHWHHNGFGYR 151
           + L+  L+  L HW+H G  YR
Sbjct: 274 RVLLYELYHNLNHWNHFGNSYR 295


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,553,098
Number of Sequences: 27780
Number of extensions: 123954
Number of successful extensions: 291
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 12,740,198
effective HSP length: 70
effective length of database: 10,795,598
effective search space used: 313072342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)