Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N23
(341 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces... 111 3e-26
SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog 1|Schizosa... 31 0.037
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ... 26 1.4
SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces pombe... 25 4.3
SPBC1718.06 |msp1|mgm1|mitochondrial GTPase Msp1|Schizosaccharom... 24 5.6
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 24 5.6
SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyce... 24 5.6
SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3 Rfp1|Schizo... 24 5.6
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 5.6
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc... 24 7.5
SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch... 24 7.5
SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|... 23 9.8
SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18 |Sch... 23 9.8
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|... 23 9.8
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 23 9.8
>SPAC18G6.14c |rps7||40S ribosomal protein S7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 195
Score = 111 bits (267), Expect = 3e-26
Identities = 53/88 (60%), Positives = 66/88 (75%)
Frame = +1
Query: 10 KPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQ 189
KP K+RV QKRPRSRTLT+V++AILED+VFP EI+GKR R DG + IKV LD
Sbjct: 103 KPGRKSRVT--QKRPRSRTLTAVHNAILEDIVFPTEIIGKRTRQATDGRKTIKVFLDNRD 160
Query: 190 QTTIEHKVDTFQSVYKKLTGREVTFEFP 273
T+++K+ +F SVY KLTG+ VTFEFP
Sbjct: 161 ANTVDYKLGSFSSVYHKLTGKNVTFEFP 188
>SPAC13F5.01c |msh1|SPAC23C11.18c|MutS protein homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 941
Score = 31.5 bits (68), Expect = 0.037
Identities = 21/72 (29%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Frame = +1
Query: 61 RTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTF-QSVYK 237
++L + YD + EDL ++ +GK+ ++ ++L VHL + TIE + F Q+V
Sbjct: 565 QSLFASYDKLQEDL---SKRLGKKATLRKSPAKLYYVHLKLSGNETIERFIKKFTQAVLF 621
Query: 238 KLTGREVTFEFP 273
+ T +F+ P
Sbjct: 622 QSTKSTASFQLP 633
>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 263
Score = 26.2 bits (55), Expect = 1.4
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
Frame = -3
Query: 171 HFDEL*AIELHSDA--FANN--LGREYQIFQYGVIYRSQCPGTGPFLFV 37
H D + ++ +DA F+N+ + + + G+IYRS CP F F+
Sbjct: 36 HKDGIKVVDTSNDASTFSNSPLVPDNFGVVYPGIIYRSACPRASNFNFL 84
>SPBPB10D8.04c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 245 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 117
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBPB10D8.05c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 245 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 117
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBPB10D8.06c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 245 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 117
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBPB10D8.07c |||membrane transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 24.6 bits (51), Expect = 4.3
Identities = 14/43 (32%), Positives = 17/43 (39%)
Frame = -1
Query: 245 VNFLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTI 117
+NFLY W S S W + L F+ LPTI
Sbjct: 115 INFLYILWIFSVAMSFFTAWVIFSTILTKRAKIEFSTF-LPTI 156
>SPBC1718.06 |msp1|mgm1|mitochondrial GTPase
Msp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 903
Score = 24.2 bits (50), Expect = 5.6
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 194 VCWFLSRCTLMSCEPSSF 141
+ WFLSR + + PSSF
Sbjct: 3 ISWFLSRFRIRTVAPSSF 20
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1334
Score = 24.2 bits (50), Expect = 5.6
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 172 HLDKNQQTTIEHKVDTFQSV 231
H+D NQQT ++H+ F+SV
Sbjct: 967 HID-NQQTLLQHRNQWFESV 985
>SPAC6G10.12c |ace2||transcription factor Ace2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 24.2 bits (50), Expect = 5.6
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -2
Query: 259 SLRAPSTSCIQTGRCQPCV 203
+L AP SCI T + +PC+
Sbjct: 355 ALSAPYESCIVTKKPEPCI 373
>SPAC19A8.10 |rfp1|mug140|ubiquitin-protein ligase E3
Rfp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 254
Score = 24.2 bits (50), Expect = 5.6
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +1
Query: 16 SHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 132
S + R N+++ RSR S + + LED+++ V R
Sbjct: 52 SPRRRRMNRRRNERSRNFPSNHLSYLEDMIYLGPQVSTR 90
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 24.2 bits (50), Expect = 5.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -1
Query: 200 IVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNM 87
I V W C+L P F+L +L IS N R M
Sbjct: 1173 IEVSWEEIECSLELSNPRLFSLQKLVEISYYNMRRIRM 1210
>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 23.8 bits (49), Expect = 7.5
Identities = 8/23 (34%), Positives = 14/23 (60%)
Frame = +1
Query: 163 IKVHLDKNQQTTIEHKVDTFQSV 231
+K+HL+K +T + HK + V
Sbjct: 271 VKIHLNKPAKTLVPHKTQSLVDV 293
>SPAC31G5.10 |eta2||Myb family transcriptional regulator
Eta2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 569
Score = 23.8 bits (49), Expect = 7.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = -2
Query: 274 RGTRKSLRAPSTSCIQTGRCQ 212
+GTR +L +P+ SC G Q
Sbjct: 13 QGTRSNLESPTLSCSSKGAMQ 33
>SPBC2G2.17c |||beta-glucosidase Psu2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 319
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = -2
Query: 88 WRHIQKSVSWNGAFSVCWLHVSCGWAC 8
W +QK+ G S C + C +AC
Sbjct: 87 WSGVQKNDGKYGTASTCQDNTYCSYAC 113
>SPAPB18E9.02c |ppk18||serine/threonine protein kinase Ppk18
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1316
Score = 23.4 bits (48), Expect = 9.8
Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +1
Query: 121 VGKRIRVKLD-GSQLIKVHLDKNQQTTIEHKVDTFQSVYKKLTGREV 258
+G+++ L G+QL+ HL+K Q + F++V ++ E+
Sbjct: 145 IGQQLTETLGFGAQLLAQHLEKLQTVPSTDSLPPFETVLCRVCDHEI 191
>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 177
Score = 23.4 bits (48), Expect = 9.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -3
Query: 108 EYQIFQYGVIYRSQCPGTGPFLFVG 34
E+ + +YG + S C G P F G
Sbjct: 33 EWNVPKYGNVLDSNCQGQKPVTFFG 57
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 23.4 bits (48), Expect = 9.8
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Frame = -2
Query: 97 LPIWRHIQKSVSWNGAFSVCWL-HVSCG 17
LP+WR Q ++S N +V + H+ G
Sbjct: 13 LPVWRRYQSNISINSIRNVGIIAHIDAG 40
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,409,423
Number of Sequences: 5004
Number of extensions: 26795
Number of successful extensions: 105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 105
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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