Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N23
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 104 2e-23
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 102 8e-23
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 31 0.18
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 0.55
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 0.72
02_02_0312 + 8855664-8855807,8856402-8856465,8858399-8858547,885... 28 2.2
11_02_0078 - 8074247-8074837,8075815-8076341,8076453-8077022,807... 27 3.9
06_01_0209 + 1587656-1587876,1587964-1588055,1590520-1590545,159... 27 5.1
08_02_0396 - 16654603-16655030,16655803-16655906,16655988-166565... 26 6.7
06_03_1097 - 27570037-27570262,27570575-27570730,27570763-275708... 26 6.7
05_04_0262 - 19514426-19515625 26 8.9
01_06_1504 + 37821676-37821778,37821855-37822072,37822713-378232... 26 8.9
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 104 bits (249), Expect = 2e-23
Identities = 43/76 (56%), Positives = 65/76 (85%)
Frame = +1
Query: 46 KRPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQ 225
+RPR+RTLT+V+D ILED+V+PAEIVGKRIR +LDG+++IK+ LD ++ E+K++TF
Sbjct: 112 QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFS 171
Query: 226 SVYKKLTGREVTFEFP 273
+VY++L G++V FE+P
Sbjct: 172 AVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 102 bits (244), Expect = 8e-23
Identities = 42/75 (56%), Positives = 62/75 (82%)
Frame = +1
Query: 49 RPRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHKVDTFQS 228
RPR+RTLT+V+D ILED+V+PAEIVGKR+R LDG +++K+ LD ++ E+K+DTF S
Sbjct: 126 RPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFSS 185
Query: 229 VYKKLTGREVTFEFP 273
VY++L G++V F++P
Sbjct: 186 VYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 31.5 bits (68), Expect = 0.18
Identities = 13/25 (52%), Positives = 19/25 (76%)
Frame = +1
Query: 52 PRSRTLTSVYDAILEDLVFPAEIVG 126
PR+RTL +V+D ILED+V ++G
Sbjct: 99 PRTRTLITVHDGILEDVVSQLRLLG 123
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 0.55
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +1
Query: 103 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 210
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 0.72
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +1
Query: 52 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 168
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>02_02_0312 +
8855664-8855807,8856402-8856465,8858399-8858547,
8859258-8859674
Length = 257
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/22 (50%), Positives = 17/22 (77%)
Frame = -3
Query: 261 SHFAPRQLLVYRLEGVNLVFNS 196
+H A +++L ++GVNLVFNS
Sbjct: 59 AHCASKEILSSSIDGVNLVFNS 80
>11_02_0078 -
8074247-8074837,8075815-8076341,8076453-8077022,
8077725-8077752
Length = 571
Score = 27.1 bits (57), Expect = 3.9
Identities = 24/77 (31%), Positives = 37/77 (48%)
Frame = -1
Query: 239 FLYTDWKVSTLCSIVVCWFLSRCTLMSCEPSSFTLMRLPTISAGNTRSSNMASYTEVSVL 60
FL +D +CS + F+ C L E F L+ TI+ + MA+ T +
Sbjct: 463 FLISD--TLAMCSSLAVAFV--CILSRSEDLEF-LLYYRTITRNLMWLAYMATTTAFAT- 516
Query: 59 ERGLFCLLATRVLWLGL 9
GL+ +LA R+LWL +
Sbjct: 517 --GLYTVLAPRILWLAI 531
>06_01_0209 +
1587656-1587876,1587964-1588055,1590520-1590545,
1591130-1591370,1591459-1591554,1591639-1591754,
1591837-1591917,1592597-1592720,1593222-1593271,
1593735-1593825,1594386-1594421,1594502-1594602,
1594684-1594800
Length = 463
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +1
Query: 109 PAEIVGKRIRVKLDG-SQLIKVHLDK 183
PA +VG+R+ VKL G +L K +DK
Sbjct: 10 PAAVVGERVAVKLRGYFELAKEEIDK 35
>08_02_0396 -
16654603-16655030,16655803-16655906,16655988-16656579,
16656820-16656993,16657105-16657309
Length = 500
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 181 KNQQTTIEHKVDTFQSVYKKL 243
KNQ+ +I HKVDT +KL
Sbjct: 188 KNQRASISHKVDTVSKESEKL 208
>06_03_1097 -
27570037-27570262,27570575-27570730,27570763-27570881,
27572154-27572236,27574991-27575041,27575218-27575674,
27576139-27576228,27576672-27576701
Length = 403
Score = 26.2 bits (55), Expect = 6.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = -3
Query: 78 YRSQCPGTGPFLFVGYTCLVAGLASC 1
++ CP G F G TC VA ASC
Sbjct: 273 HQFNCPDDG-FALAGGTCAVASAASC 297
>05_04_0262 - 19514426-19515625
Length = 399
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/23 (52%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +3
Query: 243 DGARSDF-RVPRTLLVNLDTILQ 308
DG R F R+PR LLV+LD ++
Sbjct: 172 DGIRRGFSRIPRALLVSLDNCMR 194
>01_06_1504 +
37821676-37821778,37821855-37822072,37822713-37823242,
37824040-37824483,37824923-37825616
Length = 662
Score = 25.8 bits (54), Expect = 8.9
Identities = 7/16 (43%), Positives = 12/16 (75%)
Frame = -2
Query: 82 HIQKSVSWNGAFSVCW 35
+++ +VSW F+VCW
Sbjct: 210 YVEDNVSWTVGFAVCW 225
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,306,647
Number of Sequences: 37544
Number of extensions: 181695
Number of successful extensions: 492
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 492
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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