Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N22
         (470 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    46   4e-06
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    26   2.5  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    25   4.4  

>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 18/32 (56%), Positives = 27/32 (84%)
 Frame = +1

Query: 7   GGDVTRRKKLLKQQAEGKKKMRSVANIKIPRN 102
           GGDVTR++KLL +Q EGKK+++SV N+ I ++
Sbjct: 609 GGDVTRKQKLLNKQKEGKKRLKSVGNVSIDKS 640


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = +1

Query: 250 DIEPSPLEVIPAAQ---SVDYPVAASPSVAVTQPEVYL 354
           DI+P   E++ A Q   S  +P+  +P  AVT PE  L
Sbjct: 136 DIKPPGYELVTADQAKMSGVFPLPGAPRAAVTDPEKLL 173


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = +1

Query: 22  RRKKLLKQQAEGKKKMRSVA 81
           RRKKLL  Q  GKKK +  A
Sbjct: 312 RRKKLLPSQRGGKKKSKGSA 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,054,664
Number of Sequences: 5004
Number of extensions: 13571
Number of successful extensions: 36
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)