Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N22
         (470 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0432 - 3144560-3144655,3144792-3144832,3145019-3145094,314...    55   3e-08
06_01_0325 - 2366193-2366367,2367063-2367122,2367323-2367463,236...    52   2e-07
02_05_1041 - 33713561-33714564,33714844-33714904,33715640-337159...    29   1.9  
11_06_0214 - 21327117-21327521                                         27   5.8  

>02_01_0432 -
           3144560-3144655,3144792-3144832,3145019-3145094,
           3145465-3145542,3146121-3146208,3146613-3146686,
           3147445-3147579,3147699-3147770,3148239-3148325,
           3148418-3148522,3149028-3149085,3149576-3149634,
           3149960-3150056,3150217-3150317,3150443-3150487,
           3150619-3150681,3151082-3151147,3151286-3151342,
           3151570-3151656,3152063-3152239,3152413-3152625
          Length = 624

 Score = 55.2 bits (127), Expect = 3e-08
 Identities = 21/39 (53%), Positives = 33/39 (84%)
 Frame = +1

Query: 7   GGDVTRRKKLLKQQAEGKKKMRSVANIKIPRNTFIDVLK 123
           GGD++R+KKLLK+QAEGKK+M+++  + +P+  F+ VLK
Sbjct: 580 GGDISRKKKLLKKQAEGKKRMKAIGRVDVPQEAFMAVLK 618


>06_01_0325 -
           2366193-2366367,2367063-2367122,2367323-2367463,
           2368175-2368288,2368444-2368475,2368736-2368793,
           2369263-2369434,2369584-2370334,2370743-2371036
          Length = 598

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 21/39 (53%), Positives = 32/39 (82%)
 Frame = +1

Query: 7   GGDVTRRKKLLKQQAEGKKKMRSVANIKIPRNTFIDVLK 123
           GGD+TR+KKLL++Q EGKK+M+ V ++ IP+  F ++LK
Sbjct: 555 GGDITRKKKLLEKQKEGKKRMKRVGSVDIPQEAFHELLK 593


>02_05_1041 -
           33713561-33714564,33714844-33714904,33715640-33715951,
           33716780-33716917
          Length = 504

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/22 (50%), Positives = 18/22 (81%)
 Frame = +1

Query: 253 IEPSPLEVIPAAQSVDYPVAAS 318
           ++P P++V+P  QS+D+ VAAS
Sbjct: 331 LDPIPVKVLPPKQSLDHAVAAS 352


>11_06_0214 - 21327117-21327521
          Length = 134

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 92  ILIFATLRIFFFPSACCFN 36
           +LI   +  FFFP  CCFN
Sbjct: 104 LLIVEAIFAFFFPYRCCFN 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,657,964
Number of Sequences: 37544
Number of extensions: 78868
Number of successful extensions: 317
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 313
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 317
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)