Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N22
         (470 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC036768-1|AAH36768.1|  669|Homo sapiens GUF1 GTPase homolog (S....    61   2e-09
AK023282-1|BAB14507.1|  669|Homo sapiens protein ( Homo sapiens ...    61   2e-09
AK025248-1|BAB15090.1|  297|Homo sapiens protein ( Homo sapiens ...    39   0.010
L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.       30   3.5  

>BC036768-1|AAH36768.1|  669|Homo sapiens GUF1 GTPase homolog (S.
           cerevisiae) protein.
          Length = 669

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +1

Query: 7   GGDVTRRKKLLKQQAEGKKKMRSVANIKIPRNTFIDVLK 123
           GGD+TR+ KLLK+QAEGKKK+R + N+++P++ FI VLK
Sbjct: 626 GGDITRKMKLLKRQAEGKKKLRKIGNVEVPKDAFIKVLK 664


>AK023282-1|BAB14507.1|  669|Homo sapiens protein ( Homo sapiens
           cDNA FLJ13220 fis, clone NT2RP4002047, moderately
           similar to GTP-BINDING PROTEIN LEPA. ).
          Length = 669

 Score = 60.9 bits (141), Expect = 2e-09
 Identities = 24/39 (61%), Positives = 34/39 (87%)
 Frame = +1

Query: 7   GGDVTRRKKLLKQQAEGKKKMRSVANIKIPRNTFIDVLK 123
           GGD+TR+ KLLK+QAEGKKK+R + N+++P++ FI VLK
Sbjct: 626 GGDITRKMKLLKRQAEGKKKLRKIGNVEVPKDAFIKVLK 664


>AK025248-1|BAB15090.1|  297|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21595 fis, clone COL07069. ).
          Length = 297

 Score = 38.7 bits (86), Expect = 0.010
 Identities = 16/20 (80%), Positives = 19/20 (95%)
 Frame = +1

Query: 7   GGDVTRRKKLLKQQAEGKKK 66
           GGD+TR+ KLLK+QAEGKKK
Sbjct: 271 GGDITRKMKLLKRQAEGKKK 290


>L11369-1|AAA36418.1|  258|Homo sapiens protocadherin 42 protein.
          Length = 258

 Score = 30.3 bits (65), Expect = 3.5
 Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
 Frame = +1

Query: 256 EPSPLEVIPAAQSVDYPVAASPSVAVT-QPEVYL 354
           + + LE IP  Q+ D+P AA+P+ A T + E+YL
Sbjct: 225 DSATLEEIPLTQTSDFPPAATPASAQTAKREIYL 258


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,118,585
Number of Sequences: 237096
Number of extensions: 402661
Number of successful extensions: 948
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 931
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 948
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4099895856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)