Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N22
         (470 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical pr...    44   4e-05
Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AC084197-26|AAG23468.1|  120|Caenorhabditis elegans Hypothetical...    27   5.1  

>L13200-4|AAA28191.2|  645|Caenorhabditis elegans Hypothetical
           protein ZK1236.1 protein.
          Length = 645

 Score = 44.4 bits (100), Expect = 4e-05
 Identities = 18/40 (45%), Positives = 28/40 (70%)
 Frame = +1

Query: 7   GGDVTRRKKLLKQQAEGKKKMRSVANIKIPRNTFIDVLKR 126
           GG + R  K L  Q +GK++M+ V N++IP+  F++VLKR
Sbjct: 606 GGGMERLNKKLSHQKKGKERMKMVGNVQIPKEAFLNVLKR 645


>Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical
           protein F21F12.1 protein.
          Length = 192

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 220 EVSVDRLSAVDIEPSPLEVIPAAQSVDYPVAASPSVAVTQPEVYL 354
           E + D +  VD+ P PL    A  S    V AS S    QP++ L
Sbjct: 23  EKAADTVEIVDLSPMPLLTDEAGPSTSTNVQASQSQEQLQPQMDL 67


>AC084197-26|AAG23468.1|  120|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.20 protein.
          Length = 120

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 89  LIFATLRIFFFPSACCFNN 33
           L F+ L IFF P+A CF+N
Sbjct: 50  LSFSFLHIFFCPTASCFSN 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,756,701
Number of Sequences: 27780
Number of extensions: 75003
Number of successful extensions: 226
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 223
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)