Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N21
         (568 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    25   0.34 
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    23   2.4  
AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    22   3.2  

>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 25.4 bits (53), Expect = 0.34
 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = -3

Query: 395 LNFLVFFLEVAI-FTLVPNSARGEFISQFFKL 303
           L+ +V FL V I F +  NS    F+S FFK+
Sbjct: 336 LDAIVTFLIVMIQFEMTQNSTNINFVSTFFKI 367


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/48 (20%), Positives = 18/48 (37%)
 Frame = +1

Query: 340  EFGTRVNMATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHH 483
            E  + +N+A S +   K   H+                  ++ G+HHH
Sbjct: 1130 EKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHH 1177


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/48 (20%), Positives = 18/48 (37%)
 Frame = +1

Query: 340  EFGTRVNMATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHH 483
            E  + +N+A S +   K   H+                  ++ G+HHH
Sbjct: 1130 EKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHH 1177


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/48 (20%), Positives = 18/48 (37%)
 Frame = +1

Query: 340  EFGTRVNMATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHH 483
            E  + +N+A S +   K   H+                  ++ G+HHH
Sbjct: 1130 EKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHH 1177


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 10/48 (20%), Positives = 18/48 (37%)
 Frame = +1

Query: 340  EFGTRVNMATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHH 483
            E  + +N+A S +   K   H+                  ++ G+HHH
Sbjct: 1130 EKASLINIADSLEMLNKRLDHIEKTIDPSGHISRRRSMSASSRGDHHH 1177


>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 505 HPGYFGKLGMRNYHMRRNK 561
           HP YFGK G R   ++ NK
Sbjct: 303 HPTYFGKTG-RKTVLKTNK 320


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,356
Number of Sequences: 336
Number of extensions: 2229
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 13995094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)