Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N21
         (568 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    89   4e-19
SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B 27a|Schi...    70   3e-13
SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein L27a.2/L28A|Sc...    69   4e-13
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    29   0.36 
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    28   1.1  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    23   2.7  
SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces...    26   3.4  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.4  

>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 89.0 bits (211), Expect = 4e-19
 Identities = 45/101 (44%), Positives = 59/101 (58%), Gaps = 8/101 (7%)
 Frame = -2

Query: 345 EFGTRGIYFTIL--------QAYEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTLFLL 190
           E   +G+Y TI         QAYEY  APFTI+DS+YG++F+ ATG HG+H+I+GT+ LL
Sbjct: 169 ENALKGLYMTIALSFLFLGGQAYEYWNAPFTISDSVYGASFYFATGLHGIHIIVGTILLL 228

Query: 189 ICFLRXXXXXXXXXXXXXFEAAA*Y*HFVDVV*LFLYISIY 67
           +                 FE    Y HF DVV LFLY++IY
Sbjct: 229 VATYNIYTYHLTNTHHNGFECGIYYWHFCDVVWLFLYLTIY 269


>SPBC776.11 |rpl2801|rpl28-1|60S ribosomal protein Ll28B
           27a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 32/66 (48%), Positives = 37/66 (56%)
 Frame = +1

Query: 361 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 540
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHTSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 541 YHMRRN 558
           +H+ +N
Sbjct: 61  FHLMKN 66


>SPCC5E4.07 |rpl2802|rpl28-2|60S ribosomal protein
           L27a.2/L28A|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 148

 Score = 69.3 bits (162), Expect = 4e-13
 Identities = 32/66 (48%), Positives = 37/66 (56%)
 Frame = +1

Query: 361 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 540
           M T   KTRKLRGHVS                  AGG  H R + DKYHPGYFGK+GMR 
Sbjct: 1   MPTHVSKTRKLRGHVSAGHGRIGKHRKHPGGRGKAGGLQHLRSHFDKYHPGYFGKVGMRR 60

Query: 541 YHMRRN 558
           +H+ +N
Sbjct: 61  FHLMKN 66


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 29.5 bits (63), Expect = 0.36
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 262 LWINFFYGYWISWPSCNYW 206
           LW+N  +  W+SW SCN++
Sbjct: 335 LWLNEGFATWMSWFSCNHF 353


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
 Frame = +3

Query: 75  KYKEIIILHLQSVNIMQ---LLQIQSDDYL--RNDLSYDVKSKLIKIMFQ*LHEGHE 230
           KY+EII+ H Q    MQ   LL+I S D L  +  LSY   +++  +++   ++ +E
Sbjct: 238 KYEEIIVPHAQRAPQMQGEKLLEISSMDILCRKTFLSYQTLNRIQSLVYPIAYKTNE 294


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 22.6 bits (46), Expect(2) = 2.7
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 472 HHQHYHVHQD 443
           HH H+H H D
Sbjct: 305 HHHHHHSHDD 314



 Score = 22.2 bits (45), Expect(2) = 2.7
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -1

Query: 481 DGAHHQHYHVH 449
           +G HH H+H H
Sbjct: 297 EGHHHHHHHHH 307


>SPAC3G6.04 |rnp24||RNA-binding protein Rnp24|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 306 LEEL*NKFPSCRIRHEGKYGHLQEEDQEVERTREPW 413
           LEE   K      R + KYG  +E + + E  R PW
Sbjct: 70  LEEAKKKEEKRLKRLDAKYGRKEEGESQEESKRSPW 105


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 14/53 (26%), Positives = 32/53 (60%)
 Frame = +3

Query: 78  YKEIIILHLQSVNIMQLLQIQSDDYLRNDLSYDVKSKLIKIMFQ*LHEGHEIQ 236
           Y  I ILH QS++ ++ +++ SD++L   + +D +  L  I F  + + ++++
Sbjct: 304 YMLIKILHFQSISKIEHIELISDNFLL--IQHDSQLSLWDITFGTIQDVYDLK 354


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,944,127
Number of Sequences: 5004
Number of extensions: 34110
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 80
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)