Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N21
         (568 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1250 - 25183375-25183815                                         80   1e-15
03_04_0027 + 16593133-16593573                                         75   3e-14
02_01_0563 + 4134954-4135388                                           75   3e-14
03_06_0108 + 31708713-31709079,31709258-31709822,31709933-317100...    26   0.64 
05_03_0235 - 10747649-10748118,10748226-10748314,10748477-107485...    31   0.64 
01_07_0122 - 41196081-41196205,41197561-41198245,41198961-411993...    23   2.3  
02_05_0267 - 27284781-27284957,27285082-27285126,27285858-272859...    29   3.4  

>07_03_1250 - 25183375-25183815
          Length = 146

 Score = 80.2 bits (189), Expect = 1e-15
 Identities = 37/67 (55%), Positives = 40/67 (59%)
 Frame = +1

Query: 361 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 540
           M TS +K RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTSLRKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 541 YHMRRNK 561
           +H  RNK
Sbjct: 61  FHRLRNK 67


>03_04_0027 + 16593133-16593573
          Length = 146

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 35/67 (52%), Positives = 38/67 (56%)
 Frame = +1

Query: 361 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 540
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 541 YHMRRNK 561
           +H   N+
Sbjct: 61  FHKLSNR 67


>02_01_0563 + 4134954-4135388
          Length = 144

 Score = 75.4 bits (177), Expect = 3e-14
 Identities = 35/67 (52%), Positives = 38/67 (56%)
 Frame = +1

Query: 361 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 540
           M T  KK RK RGHVS                 NAGG HHHRI  DKYHPGYFGK+GMR 
Sbjct: 1   MTTRFKKNRKKRGHVSAGHGRIGKHRKHPGGRGNAGGMHHHRILFDKYHPGYFGKVGMRY 60

Query: 541 YHMRRNK 561
           +H   N+
Sbjct: 61  FHRLSNR 67


>03_06_0108 +
           31708713-31709079,31709258-31709822,31709933-31710015,
           31710231-31710319,31710486-31710559,31710654-31710704,
           31710807-31710883,31711454-31712031,31712388-31712555,
           31713364-31713417,31713456-31713467,31713554-31713715
          Length = 759

 Score = 25.8 bits (54), Expect(2) = 0.64
 Identities = 8/12 (66%), Positives = 9/12 (75%)
 Frame = -1

Query: 481 DGAHHQHYHVHQ 446
           D  HH H+HVHQ
Sbjct: 42  DVGHHHHHHVHQ 53



 Score = 23.8 bits (49), Expect(2) = 0.64
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = -1

Query: 472 HHQHYHVHQDAYG 434
           HH H H HQ  +G
Sbjct: 47  HHHHVHQHQQQHG 59


>05_03_0235 -
           10747649-10748118,10748226-10748314,10748477-10748574,
           10748934-10749046,10749107-10749200,10749557-10749589,
           10749734-10749851,10750110-10750210,10751036-10751233,
           10751337-10751471,10751752-10751830,10753650-10753738,
           10753835-10753987,10754100-10754285
          Length = 651

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 478 GAHHQHYHVHQDAYGACRYDHDH 410
           G HH+H+H H+  +G    DH H
Sbjct: 533 GRHHRHHHDHRHRHGHSHGDHHH 555


>01_07_0122 -
           41196081-41196205,41197561-41198245,41198961-41199329,
           41199405-41199514,41200539-41200833
          Length = 527

 Score = 23.4 bits (48), Expect(3) = 2.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = -1

Query: 472 HHQHYHVHQDA 440
           HH H+H H+D+
Sbjct: 356 HHHHHHGHEDS 366



 Score = 21.4 bits (43), Expect(3) = 2.3
 Identities = 6/10 (60%), Positives = 7/10 (70%)
 Frame = -1

Query: 478 GAHHQHYHVH 449
           G HH H+H H
Sbjct: 352 GHHHHHHHHH 361



 Score = 21.0 bits (42), Expect(3) = 2.3
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -1

Query: 463 HYHVHQDAYGA 431
           HY VH+  YGA
Sbjct: 377 HYPVHEPRYGA 387


>02_05_0267 -
           27284781-27284957,27285082-27285126,27285858-27285923,
           27286043-27286114,27286225-27286350,27286563-27287217,
           27287313-27287521
          Length = 449

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 14/48 (29%), Positives = 20/48 (41%)
 Frame = -1

Query: 565 NPCFFSCGNFSYQVCQSTQGGTCPC*FCDGAHHQHYHVHQDAYGACRY 422
           +P +    N   QV   T   + P   C G HH H+H      G+C +
Sbjct: 140 SPLYLGGTNTVLQVQDMTMMSSTPA--CYGEHHHHHHHQLTKEGSCNH 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,019,768
Number of Sequences: 37544
Number of extensions: 210975
Number of successful extensions: 576
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1305140760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)