Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N21
         (568 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical ...    86   1e-17
U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical p...    28   5.4  
U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical pr...    27   7.1  
Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54327-12|CAD56557.1|  543|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z54327-11|CAD56556.1|  589|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z54307-8|CAD56577.1|  543|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54307-7|CAD56576.1|  589|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54307-5|CAD56575.1|  513|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54307-4|CAD56574.1|  510|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54307-3|CAD56573.1|  516|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54307-2|CAD56572.1|  503|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z54307-1|CAA91092.2|  493|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U23170-3|AAC46700.2|  125|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AC087079-7|AAK27870.1|  145|Caenorhabditis elegans Hypothetical
           protein Y37E3.8a protein.
          Length = 145

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 37/69 (53%), Positives = 46/69 (66%)
 Frame = +1

Query: 361 MATSKKKTRKLRGHVSXXXXXXXXXXXXXXXXXNAGGEHHHRINMDKYHPGYFGKLGMRN 540
           MA + +KTRKLRGHVS                 NAGG+HHHRIN DKYHPGYFGK+GMR 
Sbjct: 1   MAHALRKTRKLRGHVSHGHGRIGKHRKHPGGRGNAGGQHHHRINRDKYHPGYFGKVGMRV 60

Query: 541 YHMRRNKDF 567
           +H+ +N+ +
Sbjct: 61  FHLNKNQHY 69


>U80447-10|AAB37814.1|  477|Caenorhabditis elegans Hypothetical
           protein F55F8.9 protein.
          Length = 477

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -3

Query: 407 LTCPLNFLVFFLEVAIFTLVPNSARG 330
           L+C   FL+FFLE  +  ++P+ A G
Sbjct: 98  LSCLGFFLIFFLEEVVIMIIPSFAHG 123


>U41274-6|AAA82462.1|  601|Caenorhabditis elegans Hypothetical
           protein T04G9.6 protein.
          Length = 601

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = +1

Query: 496 DKYHPGYFGKLGMRNYHMRRN 558
           D YH  YFGK G   YH+ RN
Sbjct: 405 DNYHNRYFGKAG---YHLTRN 422


>Z81545-4|CAB04439.1|  352|Caenorhabditis elegans Hypothetical
           protein F49H6.4 protein.
          Length = 352

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/24 (41%), Positives = 11/24 (45%)
 Frame = -1

Query: 280 YYCR*YLWINFFYGYWISWPSCNY 209
           YY   YL  N  Y +W SW    Y
Sbjct: 6   YYATTYLTCNVEYSFWASWKGVAY 29


>Z54327-12|CAD56557.1|  543|Caenorhabditis elegans Hypothetical
           protein F14F11.1c protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 309 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 356


>Z54327-11|CAD56556.1|  589|Caenorhabditis elegans Hypothetical
           protein F14F11.1b protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 355 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 402


>Z54307-8|CAD56577.1|  543|Caenorhabditis elegans Hypothetical
           protein F14F11.1c protein.
          Length = 543

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 309 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 356


>Z54307-7|CAD56576.1|  589|Caenorhabditis elegans Hypothetical
           protein F14F11.1b protein.
          Length = 589

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 355 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 402


>Z54307-5|CAD56575.1|  513|Caenorhabditis elegans Hypothetical
           protein F14F11.1g protein.
          Length = 513

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 279 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 326


>Z54307-4|CAD56574.1|  510|Caenorhabditis elegans Hypothetical
           protein F14F11.1f protein.
          Length = 510

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 276 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 323


>Z54307-3|CAD56573.1|  516|Caenorhabditis elegans Hypothetical
           protein F14F11.1e protein.
          Length = 516

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 282 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 329


>Z54307-2|CAD56572.1|  503|Caenorhabditis elegans Hypothetical
           protein F14F11.1d protein.
          Length = 503

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 269 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 316


>Z54307-1|CAA91092.2|  493|Caenorhabditis elegans Hypothetical
           protein F14F11.1a protein.
          Length = 493

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 5/48 (10%)
 Frame = -2

Query: 303 YEYLEAPFTIADSIYGSTFFMATGFHGLHVIIGTL----FL-LICFLR 175
           ++++ +P TI D I    FF  +  H + +  G+L    FL +IC LR
Sbjct: 259 HKFVRSPLTIIDVISTGAFFFESLLHAILIQTGSLVTLDFLSMICVLR 306


>U23170-3|AAC46700.2|  125|Caenorhabditis elegans Hypothetical
           protein F58F12.2 protein.
          Length = 125

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/33 (33%), Positives = 20/33 (60%)
 Frame = +3

Query: 39  FFFLINYLISK*KYKEIIILHLQSVNIMQLLQI 137
           FF  +NYL +  K+ E ++LH     + QL+++
Sbjct: 28  FFKFVNYLWNSHKFHEQLVLHNLRKRLTQLIKV 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,639,607
Number of Sequences: 27780
Number of extensions: 194277
Number of successful extensions: 594
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1176726318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)