Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N20
         (139 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces pomb...    24   3.2  
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ...    23   4.2  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    23   5.5  

>SPBC582.08 |||alanine aminotransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 505

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -1

Query: 115 SKRLRRIRCLPTRSASYKH 59
           +KR++R+ CL    A Y H
Sbjct: 409 TKRMKRVSCLEPHGAMYLH 427


>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
           Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1894

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -1

Query: 136 KKAYLRASKRL-RRIRCLPTRSASYKHRALYKRI*N 32
           +  + R  KR+  +I C P   +SYK + L  +I N
Sbjct: 755 RNIFARMPKRIYSKILCTPEVDSSYKPKVLVSQIWN 790


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = +3

Query: 63  LYDADLVGKHLMRRNLLLA 119
           L+DA ++ KH ++ NL++A
Sbjct: 394 LHDAIMIVKHALKNNLVVA 412


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 408,440
Number of Sequences: 5004
Number of extensions: 4083
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 2,362,478
effective HSP length: 26
effective length of database: 2,232,374
effective search space used: 42415106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)