Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N20
         (139 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   1.0  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    19   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    19   4.1  
AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex det...    19   5.4  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    19   7.2  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    19   7.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             18   9.5  

>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 1.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 100 RIRCLPTRSASYKHRALYKRI 38
           R  CL TR   Y+   LYK+I
Sbjct: 274 RFGCLSTRLFYYQLTDLYKKI 294


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = +1

Query: 46  CIKLYAYMMPIL 81
           CI ++AY++P++
Sbjct: 223 CIFIWAYVIPLI 234


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 5/12 (41%), Positives = 11/12 (91%)
 Frame = +1

Query: 46  CIKLYAYMMPIL 81
           CI ++AY++P++
Sbjct: 223 CIFIWAYVIPLI 234


>AY352276-1|AAQ67417.1|  385|Apis mellifera complementary sex
           determiner protein.
          Length = 385

 Score = 19.0 bits (37), Expect = 5.4
 Identities = 10/33 (30%), Positives = 14/33 (42%)
 Frame = -1

Query: 139 KKKAYLRASKRLRRIRCLPTRSASYKHRALYKR 41
           KKK     + R R  R       SYK+   Y++
Sbjct: 259 KKKLLEERTSRKRYSRSREREQKSYKNENSYRK 291


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 97  IRCLPTRSASYKHRALYKRI 38
           IR  PT++ ++  +  YK++
Sbjct: 81  IRYFPTQALNFAFKDKYKQV 100


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/20 (30%), Positives = 13/20 (65%)
 Frame = -1

Query: 97  IRCLPTRSASYKHRALYKRI 38
           IR  PT++ ++  +  YK++
Sbjct: 81  IRYFPTQALNFAFKDKYKQV 100


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 87 CQQDRHHISIEL 52
          C Q+R HI  EL
Sbjct: 9  CIQERRHIRREL 20


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,001
Number of Sequences: 438
Number of extensions: 229
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 26
effective length of database: 134,955
effective search space used:  2564145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)