Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N19
         (572 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   6.0  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   7.9  

>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = -1

Query: 563 TYASVRLRMCTIIGLCTLTHMHAYTRMCVRKP 468
           TYA++R   C+I+ L +L      +  C+ KP
Sbjct: 276 TYANLRFSDCSILQLHSLVEKKYVSLSCLSKP 307


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -1

Query: 467 RYNQCEGPTNASYFKNNNFLEIQYSNTPLSAT 372
           R N+ +G T A+  KN N LEI  + T + +T
Sbjct: 31  RGNEYDGITPATKEKNQNKLEILNNETTIGST 62


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,172,688
Number of Sequences: 5004
Number of extensions: 41358
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)