Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N19
         (572 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0556 - 22097423-22097445,22097579-22097613,22097873-220979...    29   3.5  
01_06_0921 - 33017892-33018953                                         29   3.5  
02_04_0653 - 24747959-24748276,24748847-24748959,24749815-247500...    28   4.6  

>06_03_0556 -
           22097423-22097445,22097579-22097613,22097873-22097941,
           22113969-22114807
          Length = 321

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 362 AVTL*REFQISRSNASHYAKKCV 294
           AV+L REF +++SN S Y  +CV
Sbjct: 193 AVSLHREFWVAKSNRSQYEVRCV 215


>01_06_0921 - 33017892-33018953
          Length = 353

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = -1

Query: 362 AVTL*REFQISRSNASHYAKKCV 294
           AV+L REF +++SN S Y  +CV
Sbjct: 193 AVSLHREFWVAKSNRSQYEVRCV 215


>02_04_0653 -
           24747959-24748276,24748847-24748959,24749815-24750015,
           24750097-24750267,24750354-24750425,24751515-24751543,
           24752161-24752303
          Length = 348

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 9/27 (33%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +1

Query: 484 IRVYACICVRV-HKPIIVHMRKRTDAY 561
           +R   C+C+ + +KP+++   KR D Y
Sbjct: 40  LRFQCCVCLELLYKPVVIEDEKRVDTY 66


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,245,702
Number of Sequences: 37544
Number of extensions: 211404
Number of successful extensions: 408
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)