Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N19
         (572 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens ...    36   0.13 
AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens ...    33   0.54 
AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens ...    33   0.54 
AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens ...    33   0.94 
AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens ...    32   1.2  
AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens ...    31   2.2  
AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens ...    31   2.9  
AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens ...    29   8.8  

>AK128416-1|BAC87430.1|  303|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46559 fis, clone THYMU3040126. ).
          Length = 303

 Score = 35.5 bits (78), Expect = 0.13
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYTCVSVQMHTCLH 571
           ++ V V T+ Y+H Y   Y  + +YTCV V  H  +H
Sbjct: 120 HVCVCVHTHIYIHMYVCVYTRIYTYTCVCVCTHAYIH 156



 Score = 31.5 bits (68), Expect = 2.2
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 470 VFVRTYAYMHAYASGYISLLSYTCVSVQMHTCLH 571
           V V T+ Y+H     Y  + +YTCV V  H  +H
Sbjct: 85  VCVHTHIYIHMCVCVYTRIYTYTCVCVCTHAYIH 118



 Score = 31.5 bits (68), Expect = 2.2
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYTCVSVQMHTCLH 571
           ++ V V T+ Y+H     Y  + +YTC+ V +HT ++
Sbjct: 158 HVYVCVHTHIYIHMCVCVYTRIYTYTCMCVCVHTHIY 194



 Score = 31.1 bits (67), Expect = 2.9
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 564 HVCICTLTHVYDNRLMYPDAYACIYAY 484
           HVC+C  TH+Y +  MY   Y  IY Y
Sbjct: 120 HVCVCVHTHIYIH--MYVCVYTRIYTY 144



 Score = 30.3 bits (65), Expect = 5.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +1

Query: 481 HIRVYACICVRVHKPIIVHM 540
           H   Y CICV VH  I +HM
Sbjct: 76  HTHTYTCICVCVHTHIYIHM 95



 Score = 29.9 bits (64), Expect = 6.7
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +1

Query: 478 THIRVYACICVRVHKPIIVHMR--KRTDAYVST 570
           T I  Y C+CV VH  I +HM     T AY+ T
Sbjct: 177 TRIYTYTCMCVCVHTHIYIHMYVCVCTHAYIHT 209



 Score = 29.9 bits (64), Expect = 6.7
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYTCVSVQMHTCLH 571
           Y+ V    Y + H Y   Y  + +YTC+ V ++T ++
Sbjct: 198 YVCVCTHAYIHTHVYVCVYTRIYTYTCMCVCVYTRIY 234


>AK129846-1|BAC85241.1|  236|Homo sapiens protein ( Homo sapiens
           cDNA FLJ26336 fis, clone HRT02842. ).
          Length = 236

 Score = 33.5 bits (73), Expect = 0.54
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYT--CVSVQMHTCLH 571
           +I   + TY Y+H +A  YI + SYT  C+ + +  C H
Sbjct: 72  FIYTHMHTYMYIHIHAYAYIYVYSYTRICIHICVFICTH 110



 Score = 33.1 bits (72), Expect = 0.71
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -3

Query: 570 CRHVCICTLTHVYDNRLMYPDAYACIYAYVRTKTSI 463
           C H+CI   TH++    ++  AYA IY Y  T+  I
Sbjct: 66  CIHICIFIYTHMHTYMYIHIHAYAYIYVYSYTRICI 101



 Score = 30.3 bits (65), Expect = 5.0
 Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -3

Query: 564 HVCIC--TLTHVYDNRLMYPDAYACIYAYV 481
           H CIC  T THVY +       Y C++ Y+
Sbjct: 151 HACICVFTCTHVYISVFTCTHVYICVFIYI 180


>AK128694-1|BAC87575.1|  291|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46861 fis, clone UTERU3011092. ).
          Length = 291

 Score = 33.5 bits (73), Expect = 0.54
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYT--CVSVQMHTCLH 571
           +I   + TY Y+H +A  YI + SYT  C+ + +  C H
Sbjct: 92  FIYTHMHTYMYIHMHAYAYIYVYSYTRICIHICIFICTH 130



 Score = 31.5 bits (68), Expect = 2.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = +2

Query: 494 MHAYASGYISLLSYTCVSVQMHTCLH 571
           MHAY   Y+ + +Y C  V M+TC+H
Sbjct: 152 MHAYVYSYVHMHAYVC--VHMYTCVH 175



 Score = 30.7 bits (66), Expect = 3.8
 Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYTCV--SVQMHTCLH 571
           Y  V +  Y  +H Y   ++ +  YTC+   + M+TC+H
Sbjct: 157 YSYVHMHAYVCVHMYTCVHMCIHKYTCMHMCIHMYTCIH 195



 Score = 29.5 bits (63), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYTCVSVQMHTCLH 571
           YI + +  Y+YMH Y   YI    + C+ V ++T +H
Sbjct: 235 YIGIHMCVYSYMHRYTYVYI----HICICVHIYTHIH 267


>AK124803-1|BAC85953.1|  180|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42813 fis, clone BRCAN2012355. ).
          Length = 180

 Score = 32.7 bits (71), Expect = 0.94
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +2

Query: 485 YAYMHAYASGYISLLSYTCVSVQMHTCLH 571
           Y + H Y   YI + +YT V V +H C+H
Sbjct: 48  YTHKHMYVYTYIYVYTYTYVCVHIHICVH 76



 Score = 30.3 bits (65), Expect = 5.0
 Identities = 15/34 (44%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -1

Query: 572 YVDTYASVRLRMCTIIGLCTLTH--MHAYTRMCV 477
           Y  TY  V + +C  I LC  TH  M A+  MCV
Sbjct: 62  YTYTYVCVHIHICVHIYLCMYTHTYMCAHIHMCV 95


>AK127601-1|BAC87052.1|  415|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45698 fis, clone FEBRA2017811. ).
          Length = 415

 Score = 32.3 bits (70), Expect = 1.2
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 569 VDTYASVRLRMCTIIGLCTLTHMHAYTRM 483
           + T+    +  CT   +CT THMH YT M
Sbjct: 127 IHTHTCTHIYTCTYTVVCTHTHMHIYTHM 155


>AK126884-1|BAC86735.1|  175|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44936 fis, clone BRAMY3018121. ).
          Length = 175

 Score = 31.5 bits (68), Expect = 2.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 478 THIRVYACICVRVHKPIIVHMRKRTDAYVST 570
           TH+  Y C C   HK I  H+   T  ++ T
Sbjct: 109 THMHTYTCTCTHTHKHIHAHIHIHTHTHIYT 139


>AK126213-1|BAC86488.1|  262|Homo sapiens protein ( Homo sapiens
           cDNA FLJ44225 fis, clone THYMU3006168. ).
          Length = 262

 Score = 31.1 bits (67), Expect = 2.9
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 461 YIEVFVRTYAYMHAYASGYISLLSYTCVSVQMHTCLH 571
           YI + +  Y+YMH Y   YI +  Y C+ +  H  +H
Sbjct: 190 YIGMHICVYSYMHRYTYVYIHI--YICIHMYTHIHIH 224


>AK124805-1|BAC85954.1|  189|Homo sapiens protein ( Homo sapiens
           cDNA FLJ42815 fis, clone BRCAN2014143. ).
          Length = 189

 Score = 29.5 bits (63), Expect = 8.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -3

Query: 570 CRHVCICTLTHVYDNRLMYPDAYACIYAYV 481
           C H+C+C   H Y     Y  AY  +  Y+
Sbjct: 129 CAHMCVCVRVHTYVCMRAYIHAYMYVRTYI 158


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 68,596,442
Number of Sequences: 237096
Number of extensions: 1248573
Number of successful extensions: 2236
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2190
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)