Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N19
         (572 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66523-1|CAA91411.1|  361|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z49966-3|CAA90241.1|  361|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer am...    28   4.1  
U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer am...    28   4.1  
U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine rece...    27   7.2  
U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine rece...    27   7.2  

>Z66523-1|CAA91411.1|  361|Caenorhabditis elegans Hypothetical
           protein M05D6.1 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 552 CTLT-HVYDNRLMYPDAYACIYAYVRTKTSI*PMRGSDER 436
           C+L  H++  +  + D Y  +YA + T TS  P +G  ++
Sbjct: 196 CSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKK 235


>Z49966-3|CAA90241.1|  361|Caenorhabditis elegans Hypothetical
           protein F35C11.3 protein.
          Length = 361

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -3

Query: 552 CTLT-HVYDNRLMYPDAYACIYAYVRTKTSI*PMRGSDER 436
           C+L  H++  +  + D Y  +YA + T TS  P +G  ++
Sbjct: 196 CSLNVHLHKEQGRHDDLYGALYAMIETATSTLPWKGKPKK 235


>Z22181-4|CAA80182.1|  824|Caenorhabditis elegans Hypothetical
           protein ZK632.5 protein.
          Length = 824

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
 Frame = -2

Query: 448 VRRTHRTLKIIIS*KFSTVIPRLARPRYARLHYNAN-FKFRAQMPRITRKSAYKHNVKTI 272
           +R  H  L  ++  + S  + R  R RYA  H N   F  R  M  +  +S Y+  +KT+
Sbjct: 641 LRMLHTALNEVLETRNSETLTREPRLRYAFFHMNTTIFAIRKNMLTLIEQS-YEAFMKTL 699

Query: 271 D 269
           D
Sbjct: 700 D 700


>Z81043-1|CAB02799.1|  755|Caenorhabditis elegans Hypothetical
           protein C29F3.1 protein.
          Length = 755

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = -2

Query: 355 HYNANFKFRAQMPRITRKSAYKHNVKTIDVFFRKK*EYVLHKVF 224
           H N   K R ++ ++ R+  Y H V TID    K  + V+  VF
Sbjct: 398 HLNRQLK-RQKISKLEREKIYNHLVPTIDYSAMKNADVVIEAVF 440


>U28940-3|AAD31556.1| 1212|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform a protein.
          Length = 1212

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 231  LCNTYSYFLRKNTSIVFTLCLYALFRVMRG 320
            L NT+ YFL KN + VF +  Y  +    G
Sbjct: 991  LANTFLYFLYKNANAVFIIFYYQFYNGASG 1020


>U28940-1|AAD31557.1| 1454|Caenorhabditis elegans Transbilayer
            amphipath transporters(subfamily iv p-type atpase)
            protein 4, isoform b protein.
          Length = 1454

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +3

Query: 231  LCNTYSYFLRKNTSIVFTLCLYALFRVMRG 320
            L NT+ YFL KN + VF +  Y  +    G
Sbjct: 991  LANTFLYFLYKNANAVFIIFYYQFYNGASG 1020


>U80023-5|AAG24040.1|  315|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 31 protein.
          Length = 315

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 230 FMQYILLFFTEKYIYCFYIMFIR 298
           F++Y L++    YI+ +YI+++R
Sbjct: 94  FLEYNLIWMISSYIFRYYILYVR 116


>U80023-3|AAG24039.1|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 30 protein.
          Length = 324

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = +2

Query: 230 FMQYILLFFTEKYIYCFYIMFIR 298
           F++Y L++    YI+ +YI+++R
Sbjct: 94  FLEYNLIWMISSYIFRYYILYVR 116


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,812,465
Number of Sequences: 27780
Number of extensions: 228057
Number of successful extensions: 531
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 531
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)