Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N19
         (572 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.53 
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   5.0  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   5.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   5.0  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.53
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 563 TYASVRLRMCTIIGLCTLTHMHAYTRMCVRKPRYNQ-CEGP 444
           TY S+++ M   I    L++   Y  +CV K   NQ C  P
Sbjct: 581 TYTSLQMAMKNPIEFTDLSNERKYEDVCVLKTDTNQSCPSP 621


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 440 NASYFKNNNFLEIQYSN 390
           N + + NNN+ ++QY N
Sbjct: 98  NNNNYNNNNYKKLQYYN 114


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 440 NASYFKNNNFLEIQYSN 390
           N + + NNN+ ++QY N
Sbjct: 98  NNNNYNNNNYKKLQYYN 114


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 440 NASYFKNNNFLEIQYSN 390
           N + + NNN+ ++QY N
Sbjct: 98  NNNNYNNNNYKKLQYYN 114


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 440 NASYFKNNNFLEIQYSN 390
           N + + NNN+ ++QY N
Sbjct: 98  NNNNYNNNNYKKLQYYN 114


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -1

Query: 467 RYNQCEGPTNASYFKNNNFLEIQYSNTPLSATPLRAVT 354
           R N C G T   Y K+N     QY   P S++ L+  T
Sbjct: 375 RRNSCLGSTETYYSKHNTQQFTQY--IPESSSNLQEKT 410


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,501
Number of Sequences: 438
Number of extensions: 3049
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16504155
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)