Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N18
         (342 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.6  
SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2 |Schizo...    24   5.6  
SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    24   7.5  
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||...    23   9.8  
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc...    23   9.8  
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc...    23   9.8  
SPBC25B2.04c |||mitochondrial ribosome assembly protein|Schizosa...    23   9.8  

>SPAC31G5.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 232

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +2

Query: 188 WWVALGLVAV 217
           WWV LGL+A+
Sbjct: 214 WWVGLGLIAI 223


>SPBP19A11.06 |lid2|SPBP4H10.01|Lid2 complex subunit Lid2
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1513

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 259  LEPCGGRQPHHLQGDGDQAECDP 191
            L P  G  P H+ G   + E DP
Sbjct: 1412 LRPRNGMHPDHISGFSKEVETDP 1434


>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 240 RPPHGSRHT*RRHPP 284
           RPP   +H  R HPP
Sbjct: 370 RPPRKGKHNDRAHPP 384


>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 923

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 3   TRLQWTRFHLIDSISKYLVVFTCKVSD 83
           T +  TR  L+DS+S+   V  CK+ +
Sbjct: 763 THISKTRSLLLDSLSQQSKVLLCKIGN 789


>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 822

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/32 (25%), Positives = 15/32 (46%)
 Frame = +3

Query: 15  WTRFHLIDSISKYLVVFTCKVSDPVCDFCLDI 110
           W   +L   +  + ++ TC   D + + C DI
Sbjct: 458 WLEEYLTHEMEGHTLLITCHTQDTLNEVCTDI 489


>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
           binuclear cluster type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 522

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +3

Query: 195 SHSAWSPSPCKWCGCRPPHGSRHT*RRH 278
           SH+   P  C + GC      R   RRH
Sbjct: 489 SHTGERPFVCDYAGCGKAFNVRSNMRRH 516


>SPBC25B2.04c |||mitochondrial ribosome assembly
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 328

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 153 YILLTPALLTPDVQKYQD 100
           Y+L TP ++TP + K +D
Sbjct: 201 YMLDTPGIMTPSITKPED 218


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,353,315
Number of Sequences: 5004
Number of extensions: 24464
Number of successful extensions: 67
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)