Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N18
(342 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0686 + 26280772-26281611 30 0.41
04_01_0226 + 2842897-2842921,2843049-2843155,2843426-2843494,285... 30 0.55
08_02_0849 - 21841470-21841883,21843748-21843813,21844768-218449... 29 0.72
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 29 0.72
07_03_0799 - 21587003-21587040,21588262-21588658 29 0.95
05_01_0189 + 1361743-1361934,1362454-1362623,1362966-1363500,136... 28 1.7
03_05_0038 + 20121924-20122080,20123182-20123843 28 1.7
07_03_0906 + 22481456-22481802,22482105-22482186,22482299-224824... 28 2.2
04_02_0030 + 8819935-8820000,8820059-8820363,8820636-8820937,882... 28 2.2
08_02_0186 + 13965960-13966424 27 2.9
04_01_0358 - 4692079-4692567 27 2.9
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345... 27 3.9
03_05_1153 + 30787574-30787608,30787982-30788089,30788651-307886... 27 3.9
03_04_0152 + 17740643-17741407 27 3.9
01_06_0087 + 26299692-26299971,26301721-26301933,26302027-263024... 27 3.9
04_04_0498 - 25654988-25655168,25658149-25658257,25658376-256584... 27 5.1
01_06_1014 - 33810112-33811995 27 5.1
10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697 26 6.7
07_01_0447 - 3377666-3378673 26 6.7
06_03_0950 - 26266755-26266917,26267273-26267652,26267742-262679... 26 6.7
06_01_1013 - 7931756-7935109 26 6.7
01_03_0184 + 13560830-13562981,13563604-13564088 26 6.7
08_02_0562 + 18722730-18723236 26 8.9
05_07_0035 - 27221338-27221433,27221510-27221599,27222056-272221... 26 8.9
05_03_0038 + 7612866-7613132,7615691-7616608 26 8.9
03_04_0174 - 18044516-18046327 26 8.9
02_05_1147 - 34447519-34448042,34448126-34449092,34449458-344496... 26 8.9
>11_06_0686 + 26280772-26281611
Length = 279
Score = 30.3 bits (65), Expect = 0.41
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +3
Query: 165 HICRCGAAGGSHSAWSPSPCKW 230
H C C A G +SPS C+W
Sbjct: 235 HYCHCAAGDGHGHYYSPSSCQW 256
>04_01_0226 +
2842897-2842921,2843049-2843155,2843426-2843494,
2850676-2852745
Length = 756
Score = 29.9 bits (64), Expect = 0.55
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 4/58 (6%)
Frame = +1
Query: 46 VNIWL--CLRAKCPIQCVTFVLIFLHIGREQSRGEQYV--SASFISVGAARLVGRTRL 207
V+ W+ C+RA P T L+F G E G+ V + +++ +G A L+ T L
Sbjct: 308 VHTWIGYCIRALSPFAIATSFLLFYFCGSEVKDGQNGVDTAVTYVLLGGALLMETTSL 365
>08_02_0849 -
21841470-21841883,21843748-21843813,21844768-21844951,
21845427-21847468,21848544-21848870
Length = 1010
Score = 29.5 bits (63), Expect = 0.72
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 174 RCGAAGGSHSAWSPSPCKWCGC 239
RCGAAGG + C +CGC
Sbjct: 58 RCGAAGGLLRGEGSAVCAYCGC 79
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 29.5 bits (63), Expect = 0.72
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 177 CGAAGGSHSAWSPSPCKWCGCRP 245
CG+ +H AWSPS W RP
Sbjct: 425 CGSRVAAHRAWSPSVGDWLADRP 447
>07_03_0799 - 21587003-21587040,21588262-21588658
Length = 144
Score = 29.1 bits (62), Expect = 0.95
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +2
Query: 128 SRAGVSSMYPRRSYLSVRRGWWVALGLVAVTLQVV 232
S+A M + SY+S WW + G +AV QVV
Sbjct: 97 SKASQRGMPVQGSYMSAELVWWWSFGALAVDSQVV 131
>05_01_0189 +
1361743-1361934,1362454-1362623,1362966-1363500,
1365170-1365199
Length = 308
Score = 28.3 bits (60), Expect = 1.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 128 SRAGVSSMYPRRSYLSVRRGWWVALGLVAVTLQVV 232
S+AG M + SY WW +G AV LQV+
Sbjct: 266 SKAGRREMPVQGSYRLAELVWWWGIGASAVDLQVI 300
>03_05_0038 + 20121924-20122080,20123182-20123843
Length = 272
Score = 28.3 bits (60), Expect = 1.7
Identities = 15/40 (37%), Positives = 17/40 (42%), Gaps = 4/40 (10%)
Frame = +3
Query: 150 CIRVV----HICRCGAAGGSHSAWSPSPCKWCGCRPPHGS 257
C RVV H+ R G H W P P + C C GS
Sbjct: 204 CSRVVDPPLHMWRGGGRVAQHQEWRPRPRRRCECLEEGGS 243
>07_03_0906 +
22481456-22481802,22482105-22482186,22482299-22482400,
22483005-22483315,22483948-22484044,22484522-22484696,
22485074-22485150,22485632-22486027,22486254-22486303,
22487315-22487382,22488142-22488701
Length = 754
Score = 27.9 bits (59), Expect = 2.2
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -3
Query: 304 TEQVREAGGCRRYVCLEPCGGRQPHHLQ 221
T R GC VC++P G+ P H Q
Sbjct: 610 TRHPRHRPGCSCIVCIQPPSGKGPKHKQ 637
>04_02_0030 +
8819935-8820000,8820059-8820363,8820636-8820937,
8821938-8822014,8822519-8822869
Length = 366
Score = 27.9 bits (59), Expect = 2.2
Identities = 22/84 (26%), Positives = 33/84 (39%), Gaps = 3/84 (3%)
Frame = +3
Query: 3 TRLQWTRFHLIDSISKYLVVFTCKVSDPVCDFCLDIS---AHRA*AEPG*AVCIRVVHIC 173
TR +W +F +D L+ C + + + CL +S H E + + H C
Sbjct: 222 TRNRWDKFACVDEPGSRLLTMQCLCA--LLESCLVMSHTKKHYEWREEHLRRRLPLRHQC 279
Query: 174 RCGAAGGSHSAWSPSPCKWCGCRP 245
RC G+ SP K C P
Sbjct: 280 RCTETVGTRPRMSPVGPKSCNMTP 303
>08_02_0186 + 13965960-13966424
Length = 154
Score = 27.5 bits (58), Expect = 2.9
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
Frame = +3
Query: 180 GAAGGSHSAWSPSPCKWCGCRPPHGSR---HT*RRHPPASRTCSVTSH 314
GA G +++ +P+ C GC+PP G + PP S+ +SH
Sbjct: 35 GATGNNNNNNNPTICSGEGCQPPPGQPLPIYGYPSPPPPSQPAGPSSH 82
>04_01_0358 - 4692079-4692567
Length = 162
Score = 27.5 bits (58), Expect = 2.9
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +3
Query: 201 SAWSPSPCKWCGCRPPHGSRHT*RRHPPASR 293
S+ P+PC W RPP S H + PP SR
Sbjct: 66 SSSQPAPCSWSRIRPP-TSMHQ-QIQPPLSR 94
>07_03_1692 -
28733184-28733980,28734306-28734373,28734481-28734594,
28734835-28734884,28735012-28735422,28735534-28735610,
28736083-28736257,28736843-28736939,28737070-28737833,
28737900-28738001,28738093-28738174,28739004-28739161
Length = 964
Score = 27.1 bits (57), Expect = 3.9
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = -3
Query: 304 TEQVREAGGCRRYVCLEPCGGRQPHH 227
T+ R GC VC++P G+ P H
Sbjct: 746 TKHPRHRPGCTCIVCIQPPSGKGPKH 771
>03_05_1153 +
30787574-30787608,30787982-30788089,30788651-30788689,
30789181-30789184,30789496-30789580,30789609-30790321
Length = 327
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = +3
Query: 165 HICRCGAAGGSHSAWSPSPCKWCGCRPP 248
H C CG A A +P P ++ C PP
Sbjct: 276 HCCSCGKAPEPAPAPAPPPPQYIPCYPP 303
>03_04_0152 + 17740643-17741407
Length = 254
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 144 AVCIRVVHICRCGAAGGSHSAWSPSPCKWCG 236
A+C+ VV C AAGG+ + WSP+ + G
Sbjct: 8 ALCLAVVAAC---AAGGAVADWSPATATFYG 35
>01_06_0087 +
26299692-26299971,26301721-26301933,26302027-26302464,
26304500-26304708
Length = 379
Score = 27.1 bits (57), Expect = 3.9
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = -2
Query: 104 KTKVTHWIGHFARKHNQIFTYRVDEMK 24
+T W FA HN++ T R+D+++
Sbjct: 257 RTGCLAWFNKFAEFHNRVLTARLDDLR 283
>04_04_0498 -
25654988-25655168,25658149-25658257,25658376-25658478,
25658634-25658883,25659011-25659126,25659332-25659587,
25659713-25659800,25659951-25660025,25660143-25660218,
25660308-25660366,25660972-25661038,25668502-25668810
Length = 562
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 164 SYLSVRRGWWVALGLVAVTLQVV 232
S++S WW ++G++AV QV+
Sbjct: 82 SHMSAEVDWWWSIGVLAVVSQVI 104
>01_06_1014 - 33810112-33811995
Length = 627
Score = 26.6 bits (56), Expect = 5.1
Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
Frame = +2
Query: 146 SMYPRRSYLSVRR--GWWVALGLVAVT 220
S++P S +S R WW+ GLVA T
Sbjct: 178 SIFPENSIISKRAMIHWWIGEGLVAAT 204
>10_07_0119 + 13042477-13042864,13044114-13044259,13046104-13046697
Length = 375
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/44 (34%), Positives = 16/44 (36%)
Frame = +3
Query: 171 CRCGAAGGSHSAWSPSPCKWCGCRPPHGSRHT*RRHPPASRTCS 302
C C A GS PC CG PP +P S CS
Sbjct: 28 CACAATAGS-------PCGSCGAPPPWACARCTLLNPSGSGVCS 64
>07_01_0447 - 3377666-3378673
Length = 335
Score = 26.2 bits (55), Expect = 6.7
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -3
Query: 274 RRYVCLEPCGGRQPHHLQ---GDGDQA 203
R +VC + CGG HHL G GD A
Sbjct: 163 RVFVCGDSCGGNIAHHLTVGCGSGDIA 189
>06_03_0950 -
26266755-26266917,26267273-26267652,26267742-26267972,
26268247-26268419,26268549-26268693
Length = 363
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/57 (26%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = -2
Query: 170 DMNDADTYC--SPRLCSRPMCRNIKTKVTHWIGHFARKHNQIFTYRVDEMKTRPLQP 6
D+ DA +C P L R +C + + HFA K+ + + E + +QP
Sbjct: 264 DVCDALVFCMDQPSLAGRFLCSAAYPTIHDIVEHFAAKYPHLDVLKEPEREVARVQP 320
>06_01_1013 - 7931756-7935109
Length = 1117
Score = 26.2 bits (55), Expect = 6.7
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 4/80 (5%)
Frame = +3
Query: 81 DPVCDFCLDISAHRA*AEPG*AVC----IRVVHICRCGAAGGSHSAWSPSPCKWCGCRPP 248
D VCD L HR C +RV CRCG++G + ++ C P
Sbjct: 436 DKVCDKKLPCGVHRCKVTCHEGDCPPCVVRVEQRCRCGSSGQMVECYKVLEEEF-RCNKP 494
Query: 249 HGSRHT*RRHPPASRTCSVT 308
G + RH + C ++
Sbjct: 495 CGRKKNCGRHRCSECCCPLS 514
>01_03_0184 + 13560830-13562981,13563604-13564088
Length = 878
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = +3
Query: 228 WCGCRPPHGSRHT*RRHP 281
W C HG RH RRHP
Sbjct: 825 WALCVTGHGPRHGPRRHP 842
>08_02_0562 + 18722730-18723236
Length = 168
Score = 25.8 bits (54), Expect = 8.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 183 AAGGSHSAWSPSPCKWCGCRPPHGSR 260
++GG + WS + + G RP HG R
Sbjct: 24 SSGGREAGWSCAGMQGDGTRPAHGRR 49
>05_07_0035 -
27221338-27221433,27221510-27221599,27222056-27222115,
27222231-27222523,27222601-27222757,27222917-27223261,
27223890-27224020,27224119-27224596,27224817-27225563
Length = 798
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +1
Query: 184 RLVGRTRLGRRHXXXXXXXXXXXXXXXHSGGTRPPRAP 297
RL+ L RH SGG R P AP
Sbjct: 21 RLLPLRLLSSRHASSSSSTTAAASSSSSSGGNRAPPAP 58
>05_03_0038 + 7612866-7613132,7615691-7616608
Length = 394
Score = 25.8 bits (54), Expect = 8.9
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 3/48 (6%)
Frame = -3
Query: 232 HHLQGDGDQAECDPPAAPHRQ---I*TTRIHTAHPGSAHARCAEISRQ 98
H GDG+ + P PH+ I RIHT A C EI Q
Sbjct: 52 HDGGGDGEGSSRQPQTPPHQPNVPIGPLRIHTPERDPAQNWCNEIIAQ 99
>03_04_0174 - 18044516-18046327
Length = 603
Score = 25.8 bits (54), Expect = 8.9
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = -3
Query: 232 HHLQGDGDQAECDPPAAPHRQI*TTRIHTAHPGSAH 125
HH A PP PH+ ++R T+ P S H
Sbjct: 11 HHHHHHQHAASPSPPDQPHKSYPSSRGSTSSPSSHH 46
>02_05_1147 -
34447519-34448042,34448126-34449092,34449458-34449657,
34449867-34450051,34450130-34450228,34450316-34450357,
34450516-34450860,34450956-34451101,34451213-34451296,
34451424-34451502,34451596-34451675,34451824-34451875,
34451992-34452026
Length = 945
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 119 SGVSRAGVSSMYPRRSYLSVRRGWWVALG 205
SG+ RAG S+M P + + RG + +G
Sbjct: 817 SGIGRAGASAMAPPANPMGASRGIGMGMG 845
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,594,966
Number of Sequences: 37544
Number of extensions: 236438
Number of successful extensions: 795
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 793
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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