Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N18
         (342 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical pr...    27   4.7  
AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (...    27   4.7  
U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical pr...    26   6.1  
AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily a...    26   6.1  
Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical pr...    26   8.1  
Z81134-6|CAB03450.2|  795|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical...    26   8.1  
AL117202-31|CAD56610.1|  795|Caenorhabditis elegans Hypothetical...    26   8.1  

>Z68161-9|CAA92298.2|  688|Caenorhabditis elegans Hypothetical
           protein F20C5.5 protein.
          Length = 688

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +3

Query: 24  FHLIDSISKYLVVFTCKVSDPV 89
           FHL+++I K +V F+    DP+
Sbjct: 222 FHLLETIDKIIVTFSLYFKDPI 243


>AF038615-6|AAB94146.1|  157|Caenorhabditis elegans Ground-like (grd
           related) protein19 protein.
          Length = 157

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 11/27 (40%), Positives = 12/27 (44%), Gaps = 4/27 (14%)
 Frame = +3

Query: 171 CRCGAAGGSHSAWSPSP----CKWCGC 239
           C CG  GG     +P P    C  CGC
Sbjct: 31  CGCGGGGGGGGCCAPPPPPPVCGGCGC 57


>U80442-4|AAB37667.1|  226|Caenorhabditis elegans Hypothetical
           protein T20F5.5 protein.
          Length = 226

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = -1

Query: 144 LTPALLTPDVQKYQDKSHTLDRTLCT*TQP 55
           + PA+L P+ +K  DKS + D ++ + T P
Sbjct: 142 VAPAVLVPEKEKTADKSQSNDSSMTSFTVP 171


>AF003739-5|AAK84629.2|  422|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 96 protein.
          Length = 422

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
 Frame = +3

Query: 198 HSAWS-PSPCKWCGCRPP 248
           + +WS P PC W GC  P
Sbjct: 73  YESWSSPIPCPWKGCTSP 90


>Z81547-1|CAB04459.1|  354|Caenorhabditis elegans Hypothetical
           protein F53F8.1 protein.
          Length = 354

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 198 HSAWSPSPCKWCGC 239
           HS   P PC+W GC
Sbjct: 277 HSGEKPYPCEWPGC 290


>Z81134-7|CAD56602.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 231 CGCRPPHGSRHT*RRHPPASRTCSVTSHIDTM 326
           C C  P+ S H+  R  PA+  CSV    D +
Sbjct: 92  CVCMRPYSSPHSPVRPTPAAPDCSVFIKTDDL 123


>Z81134-6|CAB03450.2|  795|Caenorhabditis elegans Hypothetical
           protein T28D6.5a protein.
          Length = 795

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 231 CGCRPPHGSRHT*RRHPPASRTCSVTSHIDTM 326
           C C  P+ S H+  R  PA+  CSV    D +
Sbjct: 92  CVCMRPYSSPHSPVRPTPAAPDCSVFIKTDDL 123


>AL117202-32|CAD56611.1|  879|Caenorhabditis elegans Hypothetical
           protein T28D6.5b protein.
          Length = 879

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 231 CGCRPPHGSRHT*RRHPPASRTCSVTSHIDTM 326
           C C  P+ S H+  R  PA+  CSV    D +
Sbjct: 92  CVCMRPYSSPHSPVRPTPAAPDCSVFIKTDDL 123


>AL117202-31|CAD56610.1|  795|Caenorhabditis elegans Hypothetical
           protein T28D6.5a protein.
          Length = 795

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +3

Query: 231 CGCRPPHGSRHT*RRHPPASRTCSVTSHIDTM 326
           C C  P+ S H+  R  PA+  CSV    D +
Sbjct: 92  CVCMRPYSSPHSPVRPTPAAPDCSVFIKTDDL 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,116,611
Number of Sequences: 27780
Number of extensions: 168606
Number of successful extensions: 442
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)