Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N18
         (342 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   1.3  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   5.4  
AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         20   7.2  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = -3

Query: 235 PHHLQGDGDQAECDPPAAPHRQI*TTRIHTAHPGS 131
           P  L+G  D +  D P + H    +  IHT   GS
Sbjct: 60  PRSLEGSYDSSSGDSPVSSHS---SNGIHTGFGGS 91


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/14 (42%), Positives = 7/14 (50%)
 Frame = +3

Query: 198 HSAWSPSPCKWCGC 239
           H  +    CKW GC
Sbjct: 275 HPLYGHGVCKWPGC 288


>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = -3

Query: 298 QVREAGGCRRYVCL 257
           Q R+ G CR  VC+
Sbjct: 88  QRRKGGSCRNGVCI 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,775
Number of Sequences: 438
Number of extensions: 1927
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  7839909
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)