Samia BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N17
         (521 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory recept...    23   1.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    23   1.6  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    21   5.0  
AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.       21   8.7  

>AM292337-1|CAL23149.2|  452|Tribolium castaneum gustatory receptor
           candidate 16 protein.
          Length = 452

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -3

Query: 342 VGNSYIGIIIISVFFYFGASELGFMLLINLLKS 244
           VG+SYI + +    F+F  S++ +++++ LLK+
Sbjct: 267 VGDSYIVMYV----FFFHLSDVRYVMVVYLLKN 295


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/24 (29%), Positives = 17/24 (70%)
 Frame = -3

Query: 84  QTARNIIKCLFILKSLPTTFLMSS 13
           + A+N++KC++  +S P+   M++
Sbjct: 372 EQAKNVLKCVWCKQSFPSLAAMTT 395


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 279 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 166
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 251 LSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASS 288


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 279 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 166
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 251 LSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASS 288


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 21.4 bits (43), Expect = 5.0
 Identities = 8/38 (21%), Positives = 21/38 (55%)
 Frame = -3

Query: 279 LGFMLLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTN 166
           L   + +NL+  +   ++  + L G  F+C  F+++++
Sbjct: 251 LSLTVFLNLVAETLPQVSDAIPLLGTYFNCIMFMVASS 288


>AF225975-1|AAF74117.1|  256|Tribolium castaneum unknown protein.
          Length = 256

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = -2

Query: 109 HKSVNADKADGQEYNQMFVHFEVSSHN 29
           H     D  DG ++++   HFE S  N
Sbjct: 76  HPETEKDWGDGDKHDRHERHFESSFGN 102


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 85,521
Number of Sequences: 336
Number of extensions: 1293
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12573240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)