Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0010_N17
(521 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC212.04c |||S. pombe specific DUF999 family protein 1|Schizos... 27 1.3
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa... 27 1.3
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 1.3
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo... 27 1.3
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos... 27 1.3
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 26 3.0
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|... 26 3.9
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 3.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 5.2
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 6.8
>SPAC212.04c |||S. pombe specific DUF999 family protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 176 IKKQVQE-NFKPDNVKKQFNNMVDDFNKFMSSMNPN 280
IK Q + N K + +K+ N++ +F+KF +S PN
Sbjct: 61 IKPQKDKMNIKTNKIKEFLNDLFTEFSKFHNSYYPN 96
>SPAC977.06 |||S. pombe specific DUF999 family protein
3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 189
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 176 IKKQVQE-NFKPDNVKKQFNNMVDDFNKFMSSMNPN 280
IK Q + N K D +K NN+ +F+KF S P+
Sbjct: 32 IKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 67
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +2
Query: 137 GNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDF 250
G E E KK+ + PD+VKK FN+ + F
Sbjct: 463 GQELDSKEALVTEFKKRTESLSMPDHVKKVFNDELSKF 500
>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 165
Score = 27.5 bits (58), Expect = 1.3
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +2
Query: 176 IKKQVQE-NFKPDNVKKQFNNMVDDFNKFMSSMNPN 280
IK Q + N K D +K NN+ +F+KF S P+
Sbjct: 52 IKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 87
>SPBC1348.07 |||S. pombe specific DUF999 protein family
6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 230
Score = 27.5 bits (58), Expect = 1.3
Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 4/47 (8%)
Frame = +2
Query: 152 EIEKQ--FVEIKKQVQE--NFKPDNVKKQFNNMVDDFNKFMSSMNPN 280
++ KQ F I K ++ N K D +K NN+ +F+KF S P+
Sbjct: 21 KVNKQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSKFHDSCYPD 67
>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 26.2 bits (55), Expect = 3.0
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +2
Query: 104 FVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVD 244
+V D +S S+IEK K +NFKP KK + ++VD
Sbjct: 285 YVDSDLSESSMKEKQSKIEKYMKSDKSS--KNFKPPFQKKSWEDLVD 329
>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1402
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/49 (28%), Positives = 22/49 (44%)
Frame = +2
Query: 116 DAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVKKQFNNMVDDFNKFM 262
D+E TG A + + K +F P N+ QF N+ + F F+
Sbjct: 72 DSELDDTGEAKRWFPRNKIRTAKYTPIDFIPKNIFLQFQNVANLFFLFL 120
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 3.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 216 TLSGLKFSCTCFLISTNCFSISLNALPVLAASA 118
TLSGL C LI C + ++A AASA
Sbjct: 478 TLSGLATGCGILLIFLQCLNYLIDAYLFRAASA 510
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 5.2
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +2
Query: 191 QENFKPDNVKKQFNNMVDDFNKFMS 265
QENF DN+ + +N V++ F S
Sbjct: 438 QENFDSDNLSESLDNSVENLTVFPS 462
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 6.8
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 213 LSGLKFSCTCFLISTNCFSISLNALPVLAASASRFTK 103
L GLK C F S+N ++ ++L + + +FT+
Sbjct: 968 LEGLKIYCLPFFSSSNNLAVITSSLAKIEQTVEQFTE 1004
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,493,743
Number of Sequences: 5004
Number of extensions: 21493
Number of successful extensions: 102
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 212331630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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