Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0010_N17
         (521 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    27   9.1  
01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,869...    27   9.1  

>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 23  RKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQ 187
           + VV  D     +L+  +   F S+H  +    E  S+GN  ++IE+   +++ Q
Sbjct: 321 KNVVESDHSPIPNLLDPIVTLFDSIHGNILNTPEFTSSGNMSNDIEQPKTDLESQ 375


>01_01_1098 - 8691312-8692430,8692640-8693509,8694522-8696105,
            8696199-8696258,8696336-8696414,8696494-8696555,
            8697129-8697204,8697367-8697419,8698181-8698270,
            8698411-8698458
          Length = 1346

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 21/53 (39%), Positives = 28/53 (52%)
 Frame = -3

Query: 267  LLINLLKSSTMLLNCFLTLSGLKFSCTCFLISTNCFSISLNALPVLAASASRF 109
            ++++LLK  T L    L L  L FSC  +L      SISL+AL  + A  S F
Sbjct: 1269 VVLDLLKHGTCLRLTRL-LYCLAFSCRQYLAQGMIVSISLSALMRVEALVSAF 1320


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,309,253
Number of Sequences: 37544
Number of extensions: 122581
Number of successful extensions: 404
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)